Pairwise Alignments

Query, 389 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 410 a.a., CdaR family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (568), Expect = 8e-63
 Identities = 146/405 (36%), Positives = 221/405 (54%), Gaps = 42/405 (10%)

Query: 25  MFELDHDLAQDIVDRAMAILPCNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRIVE 84
           M+ LD  +A+ IV R M I+  N+NVM+ QG+ILGSG+P+RI + HEGA L +A  R VE
Sbjct: 1   MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE 60

Query: 85  LDTDAAKCLKGVQPGVNLPLMLDGRLMGVLGLTGDPQQVRTYGELVRMTAEMLLAQRNLQ 144
           L  + A  L GV+PG+NLPL   G+++GV+G+TGDP ++  YGEL++MTAEM++ Q N Q
Sbjct: 61  LSEEVASGLYGVKPGINLPLHYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQ 120

Query: 145 ADQQW-RRQRCDDLLALLLGGSGNSPRLLDEARQLGLKPQLPRIPCLFEIT---SGPPAE 200
             QQW  RQR + +L L+   + +  +L   A+QL +   LPR+  + E++   S P   
Sbjct: 121 DQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDISLPRVAAIIEVSEKQSAPTQH 180

Query: 201 ALAAWL-------------------------MSRYPD--SWCVSPARQSLLWCRPAGV-- 231
             AA+                          + + PD  +     +   L+  +PA +  
Sbjct: 181 TSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG 240

Query: 232 -----ALDELRLLERLQRHGWDIE---RLALGSAAQSLEQLRRGYRRVRDLLAYGREVLP 283
                 L+  R+ + LQR    ++   ++ALG        + R Y+  ++ L  G+++ P
Sbjct: 241 KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNP 300

Query: 284 SERLLSLQRYRLPALLWRHRNDDALDELLEPLQRIRAKDSSGQLLATLRAWCAHDGQSQS 343
                  + Y L  LL   ++D     L  P Q++   D +GQL  TL A+  H G +Q 
Sbjct: 301 EGTKYLFEDYSLQVLLSGLKHDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQ 360

Query: 344 CADALGIHRNSLRYRLERIAELGEVDPLRLEGMLSLYLGLQLLPT 388
           CA+AL IHRN+LRYRL++I +L + D   L G+LSLYLG QL+ T
Sbjct: 361 CANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLG-QLIDT 404