Pairwise Alignments

Query, 473 a.a., Group II intron-encoding maturase from Pseudomonas putida KT2440

Subject, 430 a.a., reverse transcriptase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  161 bits (408), Expect = 4e-44
 Identities = 114/361 (31%), Positives = 189/361 (52%), Gaps = 43/361 (11%)

Query: 49  NAEPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVKQYWPTLKARLLAGE 108
           NA+P ++ ++++  A LR     V +N+G+ G D +T+ D    ++     L  R+ +G 
Sbjct: 5   NAKPISISKQLVYDAFLR-----VKANRGSAGIDKVTLEDYEKNLRGNLYKLWNRMSSGS 59

Query: 109 YHPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPIFDPLFSDYSYGFRPGRST 168
           Y P +V+ VEIPK  GG R LGIP+V DR+ Q A+   +TP  +P F + SY +RP RS 
Sbjct: 60  YFPPSVKLVEIPKSTGGKRPLGIPTVSDRVAQMAVVMLITPSIEPCFHEDSYAYRPHRSA 119

Query: 169 HQAIEMARAHVTAGHRWCVELDLEKFFDRVNHDILMACIERRIKDKCVLRLIRRYLEAGI 228
           H A+  AR      + W +++D+ KFFD ++H++L+  ++R  ++K VL  I R+L+   
Sbjct: 120 HDAVGKARERCWK-YAWVLDMDISKFFDTIDHELLLKALKRHTQEKWVLMYIERWLKVPY 178

Query: 229 -MSGGVVSPRQEGTPQGGPLSPLLSNILLD-ELDRELERRGHR--FVRYADDANIYVRSP 284
             S G    R  G PQG  + P+L+N+ L    D+ +E+   R  F RYADD   +  S 
Sbjct: 179 EKSDGSQVDRALGVPQGSVIGPVLANLFLHYTFDKWMEKNFPRVPFERYADDTICHCHSL 238

Query: 285 RAGERVLVSV-ERFLRERLKLTVNRKKSQV-----ARAWKC------DYLGYGMSWHQQP 332
           +  E +   + +RF  E  +L +N +K+++     +R  +C      D+LG+      QP
Sbjct: 239 KQAEYMQAMIQQRF--ECCRLRLNEEKTKIVYCKSSRQKECYPNVTFDFLGFTF----QP 292

Query: 333 RLRV--------------ARMSLDRLRDRLRML-LRSVRARKMATVIERINPVLRGWASY 377
           R  V              +R S+ R+ + +R   L       +  +   INP++RGW +Y
Sbjct: 293 RESVDKYGNRFTGFLPAISRKSMKRINETMRSWHLNRHSNLTLEHLASDINPIVRGWMTY 352

Query: 378 F 378
           +
Sbjct: 353 Y 353