Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  152 bits (383), Expect = 2e-41
 Identities = 89/340 (26%), Positives = 170/340 (50%), Gaps = 19/340 (5%)

Query: 22  AAPTVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNETLEGKL-LAGRTGYDVVVPSN 80
           A  T++VY W  Y+ + +L  F+   G+ + Y  F++NE++  KL L   TGYDVV  S 
Sbjct: 21  AEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLLKGTGYDVVFASA 80

Query: 81  HFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAVPYLWGTNGIGYNVDK 140
           +F+ +  + G    +D +++PN +   P +L     +DP N++++PY+WG  G+ YN   
Sbjct: 81  YFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNKFSLPYIWGITGLYYNSST 138

Query: 141 VKAALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVLNYLGMDPRSEKPGDYA 200
           +      + I  WA L++ +  ++     V  +D   ++F   L   G    ++   +  
Sbjct: 139 LP-----NGITKWADLWDKQYEQQ-----VMLIDDIRDVFGMALKLNGFSINTKNEEEIK 188

Query: 201 KAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDVFQAANRAVEAKNGVKVAYSI 260
           KA   L+ L+  +  ++S        +G+  +   ++G+ +Q      E K      + +
Sbjct: 189 KAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMPELK------FVM 242

Query: 261 PKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATVGYANANPDAKAYMDAS 320
           P+EG+ LW D   IP  + N   A  FIN++  P+  A++  ++GYA+A    +A + A 
Sbjct: 243 PEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGRALLPAE 302

Query: 321 LVNNPEIYPPQEVLDKLYISSTPSPKIMRVMTRSWSKIKS 360
           L +NP I+P  E + K    +   P+ + +  + W ++++
Sbjct: 303 LRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342