Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  151 bits (382), Expect = 2e-41
 Identities = 103/339 (30%), Positives = 156/339 (46%), Gaps = 21/339 (6%)

Query: 11  AFTLLFATTTQAAPTVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNETLEGKLLAGR 70
           A +LL  T       +   NW  YI    L  F   +GIKV+Y  ++SNETL  KL    
Sbjct: 14  ALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLKTHN 73

Query: 71  TGYDVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAVPYLWG 130
            GYD+VVPS +F+A+    G    +D+SKL N+++LD   L   +  DP N Y++P++  
Sbjct: 74  QGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYDPNNDYSIPHVVA 131

Query: 131 TNGIGYNVDKVKAALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVLNYLGMD 190
             G+  N D        +   SW  L++PE   +L       MD   E+F   L  LG  
Sbjct: 132 ITGLAVNTDMYDP----NDFQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKLGYS 182

Query: 191 PRSEKPGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDVFQAANRAVEA 250
             S       +A A L +L P +  F+S    +   +G+V +   ++G      + A   
Sbjct: 183 GNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNG------SAAAAQ 236

Query: 251 KNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATVGYANAN 310
           K G+ +    PKEG   W D  AI   A N + A   I++LL P++  ++S   GY    
Sbjct: 237 KEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYLTG- 295

Query: 311 PDAKAYMDASLVNNPEIYPPQEVLDKLYISSTPSPKIMR 349
              KA  D    +   ++P QE LD++   S    K ++
Sbjct: 296 --VKASND-KFQDVAPLFPSQEDLDRVEWQSAVGDKTVK 331