Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 369 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score =  377 bits (967), Expect = e-109
 Identities = 190/362 (52%), Positives = 255/362 (70%), Gaps = 5/362 (1%)

Query: 4   LQALIPAAFTLLFATTTQAAP--TVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNET 61
           L+AL   A  LL A    AA    ++VYNW+DYI + TLA FQA +GIKV YDV+DSNE 
Sbjct: 6   LRALSGVAVALLIAGPAAAAEDKVLNVYNWSDYIAEDTLAKFQAETGIKVNYDVYDSNEL 65

Query: 62  LEGKLLAGRTGYDVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGN 121
           LE KLLAG +GYD+VVP++H L+R  QAG    LD++K+PN  +LDPKL  +    D  N
Sbjct: 66  LESKLLAGSSGYDIVVPTDHTLSRLIQAGIVQKLDKAKIPNLANLDPKLTARAAAYDADN 125

Query: 122 QYAVPYLWGTNGIGYNVDKVKAALGVD-HIDSWAVLFEPENLKKLKQCGVAFMDSPDELF 180
            ++V Y WGTNG+G N+DKV+AALG D  +DS+ +LF+PE  +KL  CG+  +DS  E+F
Sbjct: 126 AHSVIYEWGTNGLGINIDKVRAALGPDVKLDSFDLLFKPEYAEKLASCGIHVLDSAAEVF 185

Query: 181 PAVLNYLGMDPRSEKPGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDV 240
               NYLG++P S  P D  KA A  + +RPYI  FHSS++++ LANGD+C+AFGYSGD+
Sbjct: 186 SVARNYLGLEPNSTDPKDLEKATALWMGVRPYIQKFHSSEFINALANGDICVAFGYSGDI 245

Query: 241 F--QAANRAVEAKNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIA 298
           F  QA  RA EA NGVK+ Y IPKEG+ +WFDL+A+P DA +PE A  FI+++L P++ A
Sbjct: 246 FQAQAQARAKEAANGVKIDYIIPKEGTLIWFDLMAVPADAPHPENAHKFIDFILQPQISA 305

Query: 299 KVSATVGYANANPDAKAYMDASLVNNPEIYPPQEVLDKLYISSTPSPKIMRVMTRSWSKI 358
            +S  V YANAN  A   +D ++  NP IYP QEV+D+L+I  T SP++ R+ TR+W+KI
Sbjct: 306 DISNYVWYANANSKATELLDEAVRTNPSIYPTQEVMDRLFIQKTASPEMERLRTRAWNKI 365

Query: 359 KS 360
           K+
Sbjct: 366 KT 367