Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  407 bits (1047), Expect = e-118
 Identities = 194/345 (56%), Positives = 257/345 (74%), Gaps = 1/345 (0%)

Query: 17  ATTTQAAPTVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNETLEGKLLAGRTGYDVV 76
           ++   A   V VYNW+DYI + TLA+F+  +GIKV+YDVFDSNE +E KLL+GR+GYD+V
Sbjct: 20  SSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDSNEVVEAKLLSGRSGYDIV 79

Query: 77  VPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAVPYLWGTNGIGY 136
           VPSN+FLA+Q +AGAF  LD+S+L N ++L+P+L+KQLE  DP N++AVPYLWGT GIGY
Sbjct: 80  VPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETADPRNEHAVPYLWGTTGIGY 139

Query: 137 NVDKVKAALGVDH-IDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVLNYLGMDPRSEK 195
           N  KVK  LG D  +DS  ++F P+  +K+ +CG + +DS DE+ P  + YLG+DP S K
Sbjct: 140 NEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSADEMLPMAMIYLGLDPNSTK 199

Query: 196 PGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDVFQAANRAVEAKNGVK 255
             DYAKA   + ++RP++TYFHSS+Y++DLANGD+C+AFGYSGDVFQAA RA EA+NG  
Sbjct: 200 SEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGYSGDVFQAAARAEEAENGNV 259

Query: 256 VAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATVGYANANPDAKA 315
           + Y+IPKEGSNLWFD+LAIP DA N + A  FINYLL P+VIA ++  V YAN N  A+ 
Sbjct: 260 IGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEVIAPITNYVAYANPNVPAQE 319

Query: 316 YMDASLVNNPEIYPPQEVLDKLYISSTPSPKIMRVMTRSWSKIKS 360
            +D  + N+  IYP  EVL +LY++     K  R MTR W+K+KS
Sbjct: 320 LVDEEIRNDAAIYPTPEVLSRLYVADVRPMKAQRAMTRVWTKVKS 364