Pairwise Alignments

Query, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  368 bits (945), Expect = e-105
 Identities = 314/1092 (28%), Positives = 505/1092 (46%), Gaps = 101/1092 (9%)

Query: 8    MNTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVH 67
            M+ P +  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  A   
Sbjct: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60

Query: 68   QLRLIVGSEVQLCDGP------KLVLLVENLTGYQNLCALITRARRRAEKGAYQLFRDDL 121
             ++ I+G++  L          KL LL +N  GY+NL  LI++A  R       +     
Sbjct: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120

Query: 122  LLHHQGLLALWVAADSGDTATGA-------------WLRSVFAERLWLAVHLHRGSDDAV 168
            L+ H   L +     SG+                  + ++ FA+  +L +     +D+  
Sbjct: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180

Query: 169  RLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERHL 228
             L     +A    +  VA  +V           +   AI     + +  R    + +++L
Sbjct: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240

Query: 229  RSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEGHTPASWL-----RE 281
            RS+A++ EL+    + LA ++ IA+RC   +    Y  P    P G            RE
Sbjct: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN--FPTGGMAIEDFLVMKSRE 298

Query: 282  LCEQGMPLRWPDGPSGKVR-----DVLAKELGLIEELGYESYFLTVHDIVAFARSQRI-L 335
              E+ +   +PD      R     + L  EL +I ++G+  YFL V + + +++   I +
Sbjct: 299  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358

Query: 336  CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDRREEVIQYV 395
              GRGS A S+V + L IT+LDP+++ LLFERFL+ ER   PD DVDF  D+R++VI +V
Sbjct: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418

Query: 396  FRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSDRIPDDQRLAE 455
               YGR   +      T  A   +RDV R LG P   VD ++K         PD     E
Sbjct: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVP------PDPGMTLE 472

Query: 456  AGFEAGSPSLRRVLVLAGE----------LIGFPRHLSQHPGGFVISQQPLDQLVPVENA 505
              F A  P+L+ +     E          L G  R+  +H GG VIS   +    P+   
Sbjct: 473  KAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCD 531

Query: 506  AMPERTVIQWDKDDLDMVGLLKVDVLALGMLS----ALRRCFDQLQHHRGRHLTLATIPS 561
            A     V Q+DK+D++  GL+K D L L  L+    AL     +L+      + +  IP 
Sbjct: 532  AEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPL 591

Query: 562  EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 621
            +D  ++  +  A+T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  +
Sbjct: 592  DDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNF 651

Query: 622  LRRRLKQEPVTYPSPQ-----LKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRS 676
            + R+  +E ++YP  +     LKE+ E T G+ L+QEQVM++A V + YT G AD LRR+
Sbjct: 652  IDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711

Query: 677  MAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYA 736
            M   K+   +   R    +G  +NG     A +IF+ ++ F  YGF +SH+A++AL+ Y 
Sbjct: 712  MGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770

Query: 737  SSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAE 796
            + WLK H PA F  A++ +          L+ E +  G+ V P D+    +   ++ +  
Sbjct: 771  TLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNG- 829

Query: 797  GTLAIRMGLRLVRGLAEADAKRVQQARSQRPW-RNVEDLCLRAGL---DARARARLADGG 852
               AI  G+  ++G+ E   + + +AR++  + +++ D C R  L   + R   +L   G
Sbjct: 830  ---AIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886

Query: 853  ALRAL-----------------ASDRHQARWQVAAVQPQLPLFADVQALPEEPVQ--LPV 893
            AL  L                 AS  HQA         Q  +F  +   PEE  Q    V
Sbjct: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAE-----AFGQADMFGVLTDAPEEVEQKYTQV 941

Query: 894  PTVGED--LMADYQTLGTTLGPHPL-ALLRARLRALGCRSSSELQGVEHGDNIAVAGLVV 950
            P   E   L  + +TLG  L  HP+   L+   +   CR  +E        ++ VAGLV+
Sbjct: 942  PEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCR-LNEAAPTRRDQSLTVAGLVI 1000

Query: 951  GRQRPQTASG--VTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRL--EQENG 1006
              +   T  G  +  +TL+D  G + V+++    +R    L   ++L VSG++  +  NG
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNG 1060

Query: 1007 VRHLIARRLEDV 1018
               + AR + D+
Sbjct: 1061 GLKMSAREVMDL 1072