Pairwise Alignments

Query, 606 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

 Score =  299 bits (766), Expect = 2e-85
 Identities = 208/620 (33%), Positives = 327/620 (52%), Gaps = 57/620 (9%)

Query: 8   YYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDE 67
           Y+ +EL+ L+  G+EF   +P++ SR L       DP  ERL+E F+FL+AR+ +K++DE
Sbjct: 6   YFREELAFLKEQGKEFTEIHPQL-SRFL--HGRTTDPDVERLLEGFAFLTARLREKVEDE 62

Query: 68  FPEIVESFLEVLYPHYLRPTPSMSIVELSLGRHEKVTEAYRVARHTEMHANPVEGVVCKF 127
           FPE+  S + +L+P+YLRP PSMS+V  +    + V+E   + R+T++ + PV G  C F
Sbjct: 63  FPELTHSIINMLWPNYLRPIPSMSVV--AFEPDKSVSEKQVIPRNTQLDSKPVFGTACHF 120

Query: 128 RTCYPVELWPIAVQQASFTEMERSAFNGHSADLVARLRIRLAATGDALFGQMDMNRLRFF 187
            TC  V L+P+   Q    E  R A           ++I L   GD   G   ++ +RF+
Sbjct: 121 NTCRDVALYPMQC-QGVHAEHTREA---------TTIQISLRMLGDMTVGDAKLDTVRFY 170

Query: 188 LDGEATLMLQLYELLFNNLAKATLSFDDQGRSREVALPADALKTVGYARDEGLVDYSERS 247
           L G+      LY  L + L K T+    + +  E ALPADA  TVG++ D+ L+ Y +  
Sbjct: 171 LGGDKYSSQTLYLWLHHYLQKMTI----EVQGVEFALPADAFSTVGFSSDQALLPYPKNV 226

Query: 248 FLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLARLTQNIG 307
           + GYR+L EY +FP+ F FFD+ GFA+ L         +  +FS      +       + 
Sbjct: 227 YDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFS------KTLPADTRVR 280

Query: 308 RNNFKLNCTPIINLFRQQAEPIKLTHTQHEYQVTPDTRLHNAAEVVSIDRV-------RR 360
           ++NF+L CTP+INLF   A+PI LT  + EY++ P +R     E+ S+D+V         
Sbjct: 281 QDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSE 340

Query: 361 VRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRR----NQGDATAMSIRVVDRDLELID 416
            +++ G  ++ +    F+   E+  H      R R     +GD     I  V  D  L  
Sbjct: 341 GKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSM 400

Query: 417 ASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANS--VIKDIRCLRKPTATVRVPLGKG 474
              + +SI LTC+NR +PL L      GD  +  +S       + +  P+ ++R  L   
Sbjct: 401 GVDEAVSIKLTCTNRLLPLELGV----GDICVATDSSPPFATFKNITVPSQSLRPVLDGS 456

Query: 475 LIWRLIAHLSLNHLSLVSQGREVLLELLSLYNYRNV------SAIRKQINGIKAISSEPV 528
           L+W LI++LSLN+LSL+S  ++ L  +L  Y++R +         R +++GI  I S+PV
Sbjct: 457 LLWTLISNLSLNYLSLLS--KDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPV 514

Query: 529 VARI-GHPRPNFVRGVGITLTLDESQFIGSG-VFLFGRVLDHFFGQYCSMNSFTQLTLRT 586
              + G P    VRG+  TL +D++ F   G +FLFG VL HFF  Y S+NSF +L +  
Sbjct: 515 DKILRGLP----VRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVN 570

Query: 587 QQREKRVVQWPARTGDQPLV 606
              +++   W  ++G QPL+
Sbjct: 571 ISNQEK-YSWGTQSGMQPLI 589