Pairwise Alignments

Query, 1267 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (343), Expect = 1e-35
 Identities = 118/450 (26%), Positives = 196/450 (43%), Gaps = 46/450 (10%)

Query: 121 LPWYLVVGMSAAGKTSLLTHSGLS---ASIATANDSESGTQHC-DWYFSPDAVMIDTAGR 176
           LPWYLV+G+  AGKTSL+  SG +   +S+  A+  +S   +  DW+   ++V+ID  G 
Sbjct: 128 LPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGE 187

Query: 177 YLRDDQSASEFSA---------FLRMLRKQRGKAAINGLVLVVSLPELLAANSDERNALA 227
            L     + E            F+  L + R +  +NG+VL + +  L  A + ER A A
Sbjct: 188 LLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYA 247

Query: 228 AQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFGLSEIRT 287
             L AR+ E  E L    PVY+ L+K D L GF   F      +R++ LG TF +  +  
Sbjct: 248 NLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDN 307

Query: 288 NGLHAVLQTRLKKLQAHIRQHVD--------AQMIALGAEADSTLLNFPQYFAALSGVLE 339
                 L + L++  +   Q V         A    +  E  + + +F +  + L  +L+
Sbjct: 308 ------LDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQ 361

Query: 340 QFLEHFTRGHRGGAPLLLRGLYFTSALQNGQQLGQVYEDVIADEFALQAAYDEQAGHVGK 399
           QF +      +     L+RG YFTS  Q G      ++D  +  + L  A +       +
Sbjct: 362 QFFQEALASDQFSTSALVRGAYFTSVYQQGVPT-NAFDDAASRRYGLSHAINT----AQR 416

Query: 400 ALGNRSYFITDTFRQVIFPDRDLILYQSRLGRQAAFSPLLLGLA----AATGLLFIGWQA 455
           A  +  YF    F  +I+P+  L     R+ +       L+GL+    +   LL  G   
Sbjct: 417 AKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKN---KRRLMGLSFVACSVATLLLAGTWH 473

Query: 456 LSFANNRQWLDSLRGQLAHIEQAADREQQLAAGK----GLEVLREQMANVKAHRLQGVPL 511
            ++ NN Q  D++  ++   ++     + LA+ +     L  +RE  A ++    +  P 
Sbjct: 474 RNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIRE--ATLEFGFFRDKPQ 531

Query: 512 QLGG-GLYQGEAIHQVTRSAYLAQLRSQAL 540
            +   GLYQG  I       YL  L ++ L
Sbjct: 532 YISDFGLYQGHTIGPKVEETYLNLLETRFL 561



 Score = 83.2 bits (204), Expect = 1e-19
 Identities = 106/505 (20%), Positives = 202/505 (40%), Gaps = 64/505 (12%)

Query: 734  REYLRLQLESSRQF-PALSLNDLVPQ------PGRALLYGTAGVPAIYTRQGWDTFVKPE 786
            R Y  L+L +     P+++L  L+          R L   +  +P + T++G+D +  P+
Sbjct: 674  RVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQ 733

Query: 787  LIKLVSGNLRNESDWVLDGEGGDALVQKAN---FVREFMTRYKRDYTQAWYKMVSSVGVR 843
               +    L     WVL G+   A   +A+      +    Y  DYT  W   ++ + V+
Sbjct: 734  SESV--SELALIDSWVL-GQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVK 790

Query: 844  HFADLASATREL-GLLSDVQNSPVKNLLQAVNDNTQWDLPVKQAIPAPGTSRDDGFWS-- 900
            +F D+  A   L  + S+++  P++ LL+ ++DNTQ    +  A+P   ++  +   S  
Sbjct: 791  YFNDINDAVMVLENITSNLE--PMQRLLRTLDDNTQ----LYSALPKDESALKELLKSPK 844

Query: 901  -KVTGLFDANDTLPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAAL 959
             KV  + +             P  D   + K   PV          G+    M   LA++
Sbjct: 845  YKVASMIET------------PFADLNGMLK---PV----------GSKPAYMTEVLASV 879

Query: 960  RKLKVRMNNIQRSQDVGKSSKQLISETLEGQPSEITTVRNYVESSVDTSQDGLSRSLQGL 1019
             +LK  + +IQ + DVG ++       L+   + +  V      ++     GL + L  +
Sbjct: 880  DELKSYLKSIQDAPDVGMAA-------LDATKARVKLVNADPIYTLKRISSGLPKPLDSM 932

Query: 1020 FSLPIQYAWATLRDPAGEQIAKAWAQQIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFVD 1079
             +     +W  ++  A + +   W + + K ++  +A RYP   +S  + ++ D + F  
Sbjct: 933  MAKLADESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFA 992

Query: 1080 PDSGLLPAFKRNEIGNLAGGEGLGVGDGKGPALVNPGMLNSIDKASSVGQVIASLSD-RD 1138
            P+ G L  F   ++            D    +++   +L+ I +A  + +   +     D
Sbjct: 993  PN-GTLDNFYNQQLKMFIDENISVASDDSAQSIIRKEVLDQIKQAQKIREAFFNRKGILD 1051

Query: 1139 NGFEIM-LEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSTAPGARLDVVTLSGTR 1197
              F +  L  S N    V  +DGQ   Y +G        WP  +T   + +  VTL  T+
Sbjct: 1052 VSFSVEPLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWP--NTLRDSAVSKVTLIPTQ 1109

Query: 1198 VTV----FDFPGRWGLLRMNESARV 1218
              +        G W   R+ +   V
Sbjct: 1110 TNMSPRSLQIQGPWAFFRLLDQGDV 1134