Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

 Score =  496 bits (1276), Expect = e-144
 Identities = 283/708 (39%), Positives = 403/708 (56%), Gaps = 42/708 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMA--WQGQNLRDILVT 195
           FS N P GACP C GLG         ++ D +L++ + A+  W     +  Q L  +   
Sbjct: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326

Query: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGAR 255
             +DV  P+  L +  ++ IL           +G T  + +    R      +  F G  
Sbjct: 327 YDFDVHTPFNKLSKKIQEIILHG---------SGRTEIEFKYINDRGDIRLKKHPFEGIL 377

Query: 256 RYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQA 315
             +   +  ++S  +R+ +A+Y+    C  C G RLK EA  V      +  +  LS+  
Sbjct: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSI-- 435

Query: 316 LAEVFRKVAAADYLTQQQDELTLEKRLA--AQRIAKELLERIDTLLDLGLGYLALERSTP 373
                     AD LT  Q EL LE + A  A+++ KE+ +R+  L+++GL YL L RS  
Sbjct: 436 ----------ADALTFFQ-ELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAE 484

Query: 374 TLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVE 433
           TLS GE QR+RLA+Q+ + L GV+YVLDEPS GLH  D+E L + L  L+  GN+V VVE
Sbjct: 485 TLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVE 544

Query: 434 HDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAP---VQATRA 490
           HD D +R AD ++D+GP AG HGG ++  G    +     S T  YL       V   R 
Sbjct: 545 HDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRT 604

Query: 491 PRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHA 550
           P+ A+  ++L+G   NNL N+  + P+G FT VTG+SGSGKS+L++    ++    L  A
Sbjct: 605 PKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGA 664

Query: 551 EQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVR 610
              +    +S++             GL    +++ +DQ PIGRTPRSN ATYTG+F  +R
Sbjct: 665 TTATPAPYRSIQ-------------GLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIR 711

Query: 611 KCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYN 670
           + FA T++++++G+  GRFSFNV  GRC  C+G+G + VE+ F+P VY PC  C+G RYN
Sbjct: 712 ELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYN 771

Query: 671 PETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSG 730
            ETL V ++G  I +VL +TV+ A + F   P   R LQ L D+GL Y+RLGQ AT LSG
Sbjct: 772 RETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSG 831

Query: 731 GEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDM 790
           GEAQR+KLA EL +   G TLY+LDEPT GLH  DI +LL  L+RL + G++VVV+EH++
Sbjct: 832 GEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNL 891

Query: 791 RVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
            V+  +DW+ID+GP  G  GG ++  GTP+ VA    S TA FL   L
Sbjct: 892 DVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939



 Score =  135 bits (339), Expect = 1e-35
 Identities = 69/130 (53%), Positives = 94/130 (72%), Gaps = 2/130 (1%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I VRGAR HNLKNI++ IPRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG--HYPPG 129
            +  +  PDVD I+GL PA++++Q+  + + RS+VG++T +   +R+LY+R G    P  
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123

Query: 130 QAMLYAEDFS 139
           Q  L A+  S
Sbjct: 124 QVPLKAQTIS 133



 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)

Query: 4   SPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRY-- 61
           +P      + ++GA  +NLKN+D+ IP       TGVSGSGKS+L   T +  A      
Sbjct: 604 TPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNG 663

Query: 62  --FESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRML 119
               + APY            +  ++     + + Q     + RS+  + T + + IR L
Sbjct: 664 ATTATPAPYR----------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIREL 713

Query: 120 Y-----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
           +     SR+  Y PG+       FS N   G C  C G G +    E   +PD
Sbjct: 714 FAGTQESRSRGYQPGR-------FSFNVRGGRCEACQGDGVI--KVEMHFLPD 757



 Score = 49.3 bits (116), Expect = 1e-09
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSE 555
           D +++ G   +NL N++   P      +TG+SGSGKSSL    L          +     
Sbjct: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61

Query: 556 PEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
            +  SL ++P+     H+      +   + ++QK     PRS + T T ++D++R  +A
Sbjct: 62  RQFLSLMEKPD---VDHIE----GLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113