Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942

 Score =  528 bits (1360), Expect = e-154
 Identities = 304/706 (43%), Positives = 418/706 (59%), Gaps = 33/706 (4%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM---AWQGQNLRDILV 194
           FS N+P GAC  CHGLG +   +   +VPDP+L +   A+A W     ++    L  +  
Sbjct: 319 FSFNSPYGACSHCHGLGTLRTFSPELVVPDPNLPVYA-AIAPWSEKDHSYYFNLLCGVAE 377

Query: 195 TLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGA 254
             G+++   W+DL   Q+  ILF    P A      T ++ R+   R L   Y   F G 
Sbjct: 378 VSGFEISDRWQDLTPDQQHAILFGSSEPIAVE----TDSRFRD---RHL---YHRPFEGV 427

Query: 255 RRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQ 314
              +   +  + S   ++++ +Y+   TC +C G RLK E+LAV      I +L+ +S++
Sbjct: 428 IPILERQYRETSSEVYKQKLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVR 487

Query: 315 ALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPT 374
              E   K+ A      ++  LT  +      + +E+  R+  LLD+GL YL L+R   T
Sbjct: 488 ---ECLNKIEALIGSDNREPLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMT 544

Query: 375 LSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEH 434
           LS GE QR+RLATQ+ + L GV+YVLDEPS GLH  D++ L   L RL+  GN++ VVEH
Sbjct: 545 LSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEH 604

Query: 435 DLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAPVQATRAPRQA 494
           D DT+R AD LVD+GP AG HGG I+  G    L   ++S T  YL      AT   R+A
Sbjct: 605 DEDTIRAADHLVDIGPGAGVHGGRIVAQGNLNQLLTAEESLTGAYLSGRRRIATPDSRRA 664

Query: 495 RDW--LKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQ 552
            +   L L+G  RNNL NL    PLG    +TG+SGSGKS+L++    EL+   L H+  
Sbjct: 665 GNGRRLLLQGANRNNLQNLDVEIPLGKLVCITGVSGSGKSTLIN----ELLHPALEHSLG 720

Query: 553 RSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKC 612
              P  + L           V  G  +I +++ +DQ PIGRTPRSN ATYTG FD +R+ 
Sbjct: 721 LKVPFPKGLA----------VLKGTKAIDKVIVIDQSPIGRTPRSNPATYTGAFDPIRQV 770

Query: 613 FAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPE 672
           FAAT +AKA+G+  G+FSFNV  GRC  C G+G   +E+ F+P VY  C  C+GARYN E
Sbjct: 771 FAATTEAKARGYQPGQFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCDVCKGARYNRE 830

Query: 673 TLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGE 732
           TL V ++G  IA VL +TV++A Q F   P A   LQ L D+GLGY+RLGQPA  LSGGE
Sbjct: 831 TLQVKYKGKTIADVLNMTVEEAAQFFENIPQASSRLQTLVDVGLGYVRLGQPAPTLSGGE 890

Query: 733 AQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRV 792
           AQR+KLATEL R A G TLY++DEPT GL   D+ +LL  + RLV+ G+S+VV+EH++ V
Sbjct: 891 AQRVKLATELARRATGKTLYLIDEPTTGLSFYDVHKLLDVMQRLVDKGNSIVVIEHNLDV 950

Query: 793 VAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           +  +DW+ID+GP  GD GG++VV G P++VA    S T  +LA+ L
Sbjct: 951 IRCADWIIDLGPEGGDRGGEIVVCGEPEIVATHNQSHTGRYLAQVL 996



 Score =  144 bits (364), Expect = 2e-38
 Identities = 68/120 (56%), Positives = 95/120 (79%)

Query: 5   PTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFES 64
           P   +  IRVRGAR+HNL+N+D+D+PR+ L+VFTGVSGSGKSSLAF T++AE QRRY ES
Sbjct: 21  PAAETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVES 80

Query: 65  VAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
           ++ YAR+ + QV  PDVDAI+GL PA+++ Q+  + + RS+VG+VT +   +R+L+ RAG
Sbjct: 81  LSAYARQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAG 140



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)

Query: 14  VRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARRLI 73
           ++GA  +NL+N+DV+IP   LV  TGVSGSGKS+L    L+   +      V P+ + L 
Sbjct: 672 LQGANRNNLQNLDVEIPLGKLVCITGVSGSGKSTLINELLHPALEHSLGLKV-PFPKGLA 730

Query: 74  DQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SRAGHYPP 128
              G   +D +      + + Q     + RS+  + T     IR ++     ++A  Y P
Sbjct: 731 VLKGTKAIDKV------IVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQP 784

Query: 129 GQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
           GQ       FS N   G C  C G G    V E   +PD
Sbjct: 785 GQ-------FSFNVKGGRCEACGGQG--VNVIEMNFLPD 814



 Score = 52.0 bits (123), Expect = 2e-10
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 491 PRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHA 550
           P    D +++ G  ++NL NL    P       TG+SGSGKSSL    +         + 
Sbjct: 21  PAAETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTI--FAEGQRRYV 78

Query: 551 EQRSEPEAQSL--EDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDH 608
           E  S    Q L   D+P+  +       +  +   + +DQK     PRS + T T ++D+
Sbjct: 79  ESLSAYARQFLGQVDKPDVDA-------IEGLSPAISIDQKSTSHNPRSTVGTVTEIYDY 131

Query: 609 VRKCF 613
           +R  F
Sbjct: 132 LRLLF 136