Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 973 a.a., excinuclease ABC subunit A from Sinorhizobium meliloti 1021

 Score =  523 bits (1348), Expect = e-152
 Identities = 293/708 (41%), Positives = 413/708 (58%), Gaps = 42/708 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMA---WQGQNLRDILV 194
           FS N P GAC  C GLG   ++ EA +VP+P+ T+R+ A+A W  +   +  Q L  +  
Sbjct: 289 FSFNNPFGACTTCDGLGSQQKIDEALIVPEPNRTLRDGAIAPWAKSTSPYYNQTLEALGT 348

Query: 195 TLGYDVDIPWRDLPQAQRDWILF-TEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMG 253
             G+ +   W +L +  ++ IL  T++  T     G     T +            TF G
Sbjct: 349 VFGFKLGSRWSELSEEAQEAILHGTKDKITFHYQDGARSYNTTK------------TFEG 396

Query: 254 ARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSL 313
               +   +  + SA  R+ + +YM  + CP C G RLK EALAV    L I E+S +S+
Sbjct: 397 IVPNLERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKIHALHIGEVSEMSI 456

Query: 314 QALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTP 373
           +A  + F  +   ++L+ +Q+E+       A RI KE+ ER+  L D+GL YL+L R++ 
Sbjct: 457 RAARDWFEVLP--EHLSTKQNEI-------AVRILKEIRERLRFLNDVGLEYLSLSRNSG 507

Query: 374 TLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVE 433
           TLS GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D+  L + L+ L+  GN+V VVE
Sbjct: 508 TLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLRHLRDIGNTVIVVE 567

Query: 434 HDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL---FDAPVQATRA 490
           HD D +  AD++VD+GPAAG HGG ++  G P+ +    +S T  YL       V   R 
Sbjct: 568 HDEDAILTADYVVDIGPAAGIHGGEVIAEGTPSDIMSNPKSLTGKYLSGELSVAVPGERR 627

Query: 491 PRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHA 550
             + +  + + G   NNL N++A+ PLG FTAVTG+SG GKS+ + + L +     +  A
Sbjct: 628 KPKKKKEVTVVGARANNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKAAARRVMGA 687

Query: 551 EQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVR 610
             R  P      D            G   I +++ +DQ PIGRTPRSN ATYTG F  +R
Sbjct: 688 --RENPAEHDRID------------GFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIR 733

Query: 611 KCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYN 670
             FA   +AKA+G+  GRFSFNV  GRC  C+G+G + +E+ F+P VY  C  C G RYN
Sbjct: 734 DWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYN 793

Query: 671 PETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSG 730
            ETL V ++G +IA VL +TV++ ++ FA  P  R  L  L  +GLGY+++GQ A  LSG
Sbjct: 794 RETLDVHFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLVTLNQVGLGYIKIGQQANTLSG 853

Query: 731 GEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDM 790
           GEAQR+KLA EL + + G TLY+LDEPT GLH  D+ +LL  L+ LV  G+SVVV+EH++
Sbjct: 854 GEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEVLHELVNQGNSVVVIEHNL 913

Query: 791 RVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
            V+  +DW+ID GP  GD GG+V+  GTP+ V     S T  FL + L
Sbjct: 914 EVIKTADWIIDFGPEGGDGGGEVIAQGTPEEVVKEPRSYTGQFLKELL 961



 Score =  137 bits (344), Expect = 4e-36
 Identities = 63/113 (55%), Positives = 90/113 (79%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I +RGAREHNLK ID+D+PR+ L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
            ++ +  PDVD IDGL PA++++Q+  + + RS+VG+VT +   +R+L++R G
Sbjct: 67  FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFARVG 119



 Score = 59.3 bits (142), Expect = 1e-12
 Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYF---ESVAPY 68
           + V GAR +NLKN+   IP       TGVSG GKS+    TLY  A RR     E+ A +
Sbjct: 635 VTVVGARANNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKAAARRVMGARENPAEH 694

Query: 69  ARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SRA 123
            R          +D  + +   + + Q     + RS+  + T   + IR  +     ++A
Sbjct: 695 DR----------IDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKA 744

Query: 124 GHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLT 171
             Y PG+       FS N   G C  C G G +    E   +PD  +T
Sbjct: 745 RGYQPGR-------FSFNVKGGRCEACQGDGVI--KIEMHFLPDVYVT 783



 Score = 47.4 bits (111), Expect = 4e-09
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 498 LKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPE 557
           + + G   +NL  +    P      +TG+SGSGKSSL    +         + E  S   
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIY--AEGQRRYVESLSAYA 64

Query: 558 AQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
            Q LE   +P+          +  +   + ++QK   R PRS + T T ++D++R  FA
Sbjct: 65  RQFLEMMQKPDVDQ-------IDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFA 116