Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 939 a.a., excinuclease ABC, A subunit from Dechlorosoma suillum PS

 Score =  516 bits (1328), Expect = e-150
 Identities = 286/707 (40%), Positives = 407/707 (57%), Gaps = 41/707 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMAWQG--QNLRDILVT 195
           FS N P GACP+C GLG +       +V  P L++   A+  W    Q   Q +  +   
Sbjct: 266 FSFNNPMGACPKCDGLGVIQFFDPKRVVAHPDLSLAAGAIRGWDKRNQFYFQMIGSLAEY 325

Query: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGAR 255
            G+ VD P+ +L    +  +L+  +    P          R  L  K E +++G      
Sbjct: 326 YGFSVDTPFSELTDEVKQVLLYGSDKDLVPFQY----MNERGKLVLK-EHAFEGIIPNLE 380

Query: 256 RYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQA 315
           R     +  + S  +R+ +A+Y+  +TCP C+G RL++EA  V      + E+SHL L  
Sbjct: 381 R----RYKETDSLAVREELAKYISNTTCPTCEGTRLRQEARHVKVGSKTLHEISHLPLAE 436

Query: 316 LAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTL 375
             + F  +           +LT  K   A++I KE+  R+  L+++GL YL+L+RS  TL
Sbjct: 437 ARDYFETI-----------QLTGHKAQVAEKILKEITSRLQFLINVGLDYLSLDRSAETL 485

Query: 376 SSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHD 435
           S GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D++ L + L++L+  GN+V VVEHD
Sbjct: 486 SGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLQTLRQLRDIGNTVIVVEHD 545

Query: 436 LDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAP-VQATRAPRQA 494
            D +R AD++VD+GP AG HGG I+  G P  + +   S T  YL     ++  +  RQA
Sbjct: 546 EDAIRTADYVVDIGPGAGVHGGAIVAEGTPQQVTDNPASMTGDYLSGRKKIEVPKKRRQA 605

Query: 495 RDWLKLE--GITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHL-GHAE 551
               KL+  G   NNL ++S   P+G  T +TG+SGSGKS+L++  L      HL G   
Sbjct: 606 DPEKKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAAAKHLYGSTA 665

Query: 552 QRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRK 611
           + +E E                  GL    +++ VDQ PIGRTPRSN ATYTGL   +R+
Sbjct: 666 EPAEHEE---------------IIGLDHFDKVINVDQSPIGRTPRSNPATYTGLLTPIRE 710

Query: 612 CFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNP 671
            FA   +A+++G+  GRFSFNV  GRC  C+G+G + VE+ F+P +Y PC  C G RYN 
Sbjct: 711 LFAGVPEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGKRYNR 770

Query: 672 ETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGG 731
           ETL V ++G +I  VLQ+TV+QA + F   P   R LQ L D+GL Y+ LGQ AT LSGG
Sbjct: 771 ETLEVHYKGKSIYDVLQMTVEQAREFFDPVPVVARKLQTLVDVGLSYITLGQSATTLSGG 830

Query: 732 EAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMR 791
           EAQR+KLA EL +   G TLY+LDEPT GLH  DI+ LL  L+RL + G++VVV+EH++ 
Sbjct: 831 EAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIEMLLKVLHRLADHGNTVVVIEHNLD 890

Query: 792 VVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           V+  +DW++D+GP  G  GG+++ +G P+ V    +S T  FL   L
Sbjct: 891 VIKTADWLVDLGPEGGGGGGRIIAAGAPEAVVKVGESHTGRFLKPLL 937



 Score =  139 bits (349), Expect = 1e-36
 Identities = 65/113 (57%), Positives = 90/113 (79%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I++RGAR HNLKNI +D+PRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 4   IKIRGARTHNLKNISLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
            +  +  PDVD I+GL PA++++Q+  + + RS+VG+VT +   +R+LY+RAG
Sbjct: 64  FLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAG 116



 Score = 64.3 bits (155), Expect = 3e-14
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 21/165 (12%)

Query: 8   PSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAP 67
           P   ++V GA+ +NLK++ +++P   +   TGVSGSGKS+L   TLY  A +  + S A 
Sbjct: 607 PEKKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAAAKHLYGSTAE 666

Query: 68  YARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SR 122
            A          ++  +D     + + Q     + RS+  + T L + IR L+     +R
Sbjct: 667 PAEH-------EEIIGLDHFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFAGVPEAR 719

Query: 123 AGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
           +  Y PG+       FS N   G C  C G G +    E   +PD
Sbjct: 720 SRGYGPGR-------FSFNVKGGRCEACQGDGVI--KVEMHFLPD 755



 Score = 48.9 bits (115), Expect = 1e-09
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSE 555
           D +K+ G   +NL N+S   P      +TG+SGSGKSSL    L         + E  S 
Sbjct: 2   DEIKIRGARTHNLKNISLDLPRDKLIVITGLSGSGKSSLAFDTL--YAEGQRRYVESLSA 59

Query: 556 PEAQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCF 613
              Q L+  ++P+          +  +   + ++QK     PRS + T T + D++R  +
Sbjct: 60  YARQFLQLMEKPDVDL-------IEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLY 112

Query: 614 A 614
           A
Sbjct: 113 A 113