Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

 Score =  505 bits (1301), Expect = e-147
 Identities = 285/707 (40%), Positives = 421/707 (59%), Gaps = 30/707 (4%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM---AWQGQNLRDILV 194
           FS N+P GAC  C GLG   E     ++PD +  I + AVA +      ++ Q+L  +  
Sbjct: 266 FSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVAN 325

Query: 195 TLGYDVDIPWRDLPQAQRDWILF-TEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMG 253
             G+ V  P +DL + Q D +++ + E     V  G              E S    + G
Sbjct: 326 HFGFTVLTPIKDLSKEQLDILMYGSPEKIHFKVSNG----------SGDTEWSQNKPWEG 375

Query: 254 ARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSL 313
                +  +  ++S   RK + ++M  S CP C GKRLK +ALAV      I +L+ LS+
Sbjct: 376 LIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSI 435

Query: 314 QALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTP 373
               E F  +     LT ++ E+       A+++ KE+  R+  L D+GLGYL L R + 
Sbjct: 436 SKAEEFFNNLK----LTDKEYEI-------AKQVIKEIKSRLKFLNDVGLGYLTLSRRSG 484

Query: 374 TLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVE 433
           TLS GE QR+RLATQ+ S L GV+YVLDEPS GLH  D++ L E L +L+   N++ VVE
Sbjct: 485 TLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVE 544

Query: 434 HDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLF-DAPVQATRAPR 492
           HD DT+  AD++VD+GP AG HGG ++  G P  +++ + S T  YL  +  ++  +  R
Sbjct: 545 HDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRR 604

Query: 493 QARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQ 552
           ++  +LKL    +NNL ++S   P G F  +TG+SGSGKS+L+ + L   +   +   E 
Sbjct: 605 KSDKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDES 664

Query: 553 RSEPEAQSLEDEPEQTSSGHVSAGLGS-IKRLVQVDQKPIGRTPRSNLATYTGLFDHVRK 611
             E +    ED+  + +    +  + S I ++V +DQ PIGRTPRSN ATYT +FD +R+
Sbjct: 665 VGELD---FEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQ 721

Query: 612 CFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNP 671
            FA T++AK +G+  GRFSFNV  GRC NC+G+G + +E+ F+P V+  C  C+GARYN 
Sbjct: 722 VFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNH 781

Query: 672 ETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGG 731
           ETL V ++G +I+ VL ++V++A + F   P     L+ L D+GLGY++LGQ +T LSGG
Sbjct: 782 ETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGG 841

Query: 732 EAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMR 791
           EAQRIKL  EL + A G T+Y+LDEPT GLH  D+ +L+  LN LVE G++VVV+EH++ 
Sbjct: 842 EAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLD 901

Query: 792 VVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           V+  +D +ID+GP  G+ GG+++ +GTP+ +A C  S T  FL   L
Sbjct: 902 VIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNIL 948



 Score =  132 bits (333), Expect = 7e-35
 Identities = 62/113 (54%), Positives = 89/113 (78%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I ++GAREHNLKNI + +PR+ L+V TGVSGSGKS++AF T+YAE QRRY ES++ YAR+
Sbjct: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
            +  +  PDVD+I+GL PA+A+QQ+  + + RS+VG+VT +   +R+LY+R G
Sbjct: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIG 116



 Score = 59.7 bits (143), Expect = 8e-13
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 24/224 (10%)

Query: 1   MPPSPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRR 60
           +P +      F+++   R++NLK++ V+IP     V TGVSGSGKS+L +  LY   + +
Sbjct: 599 IPKNRRKSDKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEK 658

Query: 61  YFESVAPYARRLIDQV-----GVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSS 115
                +       DQ+        +++    +   V + Q     + RS+  + T +   
Sbjct: 659 IKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDK 718

Query: 116 IRMLYSRAGH-----YPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSL 170
           IR +++         Y PG+       FS N   G C  C G G +    E   +PD  +
Sbjct: 719 IRQVFAETKEAKIKGYGPGR-------FSFNVKGGRCENCQGDGVI--KIEMNFLPDVFV 769

Query: 171 TIRERAVAAW-----PMAWQGQNLRDILVTLGYDVDIPWRDLPQ 209
              E   A +      + ++G+++ D+L     +    ++++PQ
Sbjct: 770 ECEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQ 813



 Score = 47.4 bits (111), Expect = 4e-09
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 500 LEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEAQ 559
           ++G   +NL N+S   P      VTG+SGSGKS++    +          +      +  
Sbjct: 6   IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFL 65

Query: 560 SLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
            L ++P+  S       +  +   + + QK   + PRS + T T ++D++R  +A
Sbjct: 66  GLMNKPDVDS-------IEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113