Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 941 a.a., excinuclease ABC subunit A from Klebsiella michiganensis M5al

 Score =  498 bits (1283), Expect = e-145
 Identities = 273/708 (38%), Positives = 405/708 (57%), Gaps = 42/708 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMA--WQGQNLRDILVT 195
           FS N P GACP C GLG         ++ +P L++   A+  W     +  Q L+ +   
Sbjct: 268 FSFNNPAGACPTCDGLGVQQYFDPERVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLAEH 327

Query: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGAR 255
             +DV+ PW  L  + +  +L+          +G    + +    R      +  F G  
Sbjct: 328 YEFDVEAPWGTLNSSVQKVVLYG---------SGKENIEFKYMNDRGDTSVRRHPFEGVL 378

Query: 256 RYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQA 315
             +   +  ++S+ +R+ +A+++    C  C+G RLKREA  V      +  +S +S+  
Sbjct: 379 HNMERRYKETESSAVREELAKFISNRPCTSCEGTRLKREARHVFVENTPLPTISDMSIGH 438

Query: 316 LAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTL 375
             + F  +           +L+ ++   A+++ KE+ +R+  L+++GL YL L RS  TL
Sbjct: 439 AMDFFNNL-----------KLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETL 487

Query: 376 SSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHD 435
           S GE QR+RLA+Q+ + L GV+YVLDEPS GLH  D+E L   L  L+  GN+V VVEHD
Sbjct: 488 SGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHD 547

Query: 436 LDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL-----FDAPVQATRA 490
            D +R AD ++D+GP AG HGG ++  G    +  V +S T  ++      + P Q  R 
Sbjct: 548 EDAIRAADHVIDIGPGAGVHGGQVVAEGKLEDIMAVPESLTGQFMSGKRKIEVPKQ--RV 605

Query: 491 PRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHA 550
           P      LKL G   NNL +++   P+G FT +TG+SGSGKS+L++  L  +        
Sbjct: 606 PANPEKVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIA------- 658

Query: 551 EQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVR 610
            QR    A   E  P +   G     L    +++ +DQ PIGRTPRSN ATYTG+F  VR
Sbjct: 659 -QRQLNGATIAEPAPYRDVQG-----LEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVR 712

Query: 611 KCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYN 670
           + FA   +++++G+  GRFSFNV  GRC  C+G+G + VE+ F+P +Y PC  C+G RYN
Sbjct: 713 ELFAGVPESRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYN 772

Query: 671 PETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSG 730
            ETL + ++G  I +VL +T+++A + F   P   R LQ L D+GL Y+RLGQ AT LSG
Sbjct: 773 RETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSG 832

Query: 731 GEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDM 790
           GEAQR+KLA EL +   G TLY+LDEPT GLH  DI +LL  L++L + G+++VV+EH++
Sbjct: 833 GEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNL 892

Query: 791 RVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
            V+  +DW++D+GP  G  GG+++VSGTP+ VA C  S TA FL   L
Sbjct: 893 DVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASYTARFLKPML 940



 Score =  133 bits (335), Expect = 4e-35
 Identities = 64/113 (56%), Positives = 88/113 (77%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I VRGAR HNLKNI++ IPRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
            +  +  PDVD I+GL PA++++Q+  + + RS+VG++T +   +R+LY+R G
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVG 116



 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)

Query: 5   PTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRY--- 61
           P  P   +++ GAR +NLK++ + +P       TGVSGSGKS+L   TL+  AQR+    
Sbjct: 606 PANPEKVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGA 665

Query: 62  -FESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY 120
                APY           DV  ++     + + Q     + RS+  + T + + +R L+
Sbjct: 666 TIAEPAPYR----------DVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELF 715

Query: 121 -----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
                SR+  Y PG+       FS N   G C  C G G +    E   +PD
Sbjct: 716 AGVPESRSRGYTPGR-------FSFNVRGGRCEACQGDGVI--KVEMHFLPD 758



 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSE 555
           D +++ G   +NL N++   P      VTG+SGSGKSSL    L          +     
Sbjct: 2   DKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61

Query: 556 PEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAA 615
            +  SL ++P+     H+      +   + ++QK     PRS + T T + D++R  +A 
Sbjct: 62  RQFLSLMEKPD---VDHIE----GLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYAR 114

Query: 616 TEQAKAQGFD 625
             + +    D
Sbjct: 115 VGEPRCPDHD 124