Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 968 a.a., excinuclease ABC subunit A from Caulobacter crescentus NA1000

 Score =  515 bits (1327), Expect = e-150
 Identities = 286/707 (40%), Positives = 408/707 (57%), Gaps = 39/707 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW---PMAWQGQNLRDILV 194
           FS N P GACP C GLG         ++PD   T+   AVA W   P     Q L+ +  
Sbjct: 276 FSFNNPAGACPVCDGLGAKLAFDADLVIPDKDRTLHGGAVAPWAKGPSPLYTQTLQALAR 335

Query: 195 TLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGA 254
             G+ +D PW  L    RD +L   +       A +       A K ++E  ++G     
Sbjct: 336 HYGFSMDEPWHKLSTEARDVVLNGSKG------AKIKFVYDDNARKYEVEKPFEGVLPNL 389

Query: 255 RRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQ 314
            R     +  + S+ +R+ + ++   + C  C GKRLK EALAV  +G+DIAE+S ++++
Sbjct: 390 ER----RWRETDSSWVREELGRFQSDTPCESCHGKRLKPEALAVKVSGMDIAEVSMMAIR 445

Query: 315 ALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPT 374
                     A D+    + +L+ ++   A+RI KE+ +R+  L+D+GL YL + R + T
Sbjct: 446 P---------ARDWFAGLEGKLSDKQMEIARRILKEINDRLRFLVDVGLDYLNMSRGSGT 496

Query: 375 LSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEH 434
           LS GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D+  L  +LQ L+  GNSV VVEH
Sbjct: 497 LSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNTRLLTSLQGLRDLGNSVLVVEH 556

Query: 435 DLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDA---PVQATRAP 491
           D + +  AD+++D+GPAAG HGG I+  G PA +    +S T  YL  A    V   R P
Sbjct: 557 DEEAILTADYVIDMGPAAGVHGGEIVAQGKPADIMANPKSLTGQYLTGAREIEVPEQRRP 616

Query: 492 RQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAE 551
              +  L++ G T NNL  ++A  P+G FT +TG+SG GKS+   + L +     L +A 
Sbjct: 617 ISKKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNAS 676

Query: 552 QRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRK 611
               P  +                GL    +++ +DQ PIGRTPRSN ATYTG F  +R 
Sbjct: 677 DAPAPHERI--------------EGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRD 722

Query: 612 CFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNP 671
            FA   ++KA+G+  GRFSFNV  GRC  C+G+G + +E+ F+P VY  C  C+G RYN 
Sbjct: 723 WFAGLPESKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDICKGKRYNR 782

Query: 672 ETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGG 731
           ETL V ++G  IA VL +TV++A   F   PP R  ++ L+ +GL Y+++GQ AT LSGG
Sbjct: 783 ETLDVVFKGKTIADVLDMTVEEAADFFKAVPPIRDKMETLKRVGLSYIKVGQQATTLSGG 842

Query: 732 EAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMR 791
           EAQR+KL+ EL + A G TLY+LDEPT GLH +D  +LL  L+ L + G++VVV+EH++ 
Sbjct: 843 EAQRVKLSKELSKRATGRTLYILDEPTTGLHFEDTKKLLEVLHELADQGNTVVVIEHNLD 902

Query: 792 VVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           VV  +DW++D GP  GD GG++V  G+PQ VA    S T  +L + L
Sbjct: 903 VVKTADWLLDFGPEGGDGGGEIVAVGSPQDVAKVEASWTGRYLKELL 949



 Score =  139 bits (350), Expect = 8e-37
 Identities = 66/114 (57%), Positives = 91/114 (79%)

Query: 11  FIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYAR 70
           FIRVRGAREHNLK++ VDIPR  LVV TG+SGSGKSSLAF T+YAE QRRY ES++ YAR
Sbjct: 7   FIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 66

Query: 71  RLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
           + ++ +  PDVD I+GL PA++++Q+  + + RS+VG+VT +   +R+L++R G
Sbjct: 67  QFLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVG 120



 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 5   PTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRY--- 61
           P +    +RV GA  +NLK +  +IP       TGVSG GKS+    TLY  A RR    
Sbjct: 616 PISKKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNA 675

Query: 62  FESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY- 120
            ++ AP+ R          ++ ++     + + Q     + RS+  + T     IR  + 
Sbjct: 676 SDAPAPHER----------IEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWFA 725

Query: 121 ----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLT 171
               S+A  Y PG+       FS N   G C  C G G +    E   +PD  +T
Sbjct: 726 GLPESKARGYGPGR-------FSFNVKGGRCEACQGDGVI--KIEMHFLPDVYVT 771



 Score = 48.5 bits (114), Expect = 2e-09
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 25/128 (19%)

Query: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQAL--------LELVGAHL 547
           +++++ G   +NL ++S   P G    +TG+SGSGKSSL    +        +E + A+ 
Sbjct: 6   NFIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 65

Query: 548 GH-AEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLF 606
               E  S+P+   +E                 +   + ++QK   R PRS + T T + 
Sbjct: 66  RQFLELMSKPDVDLIE----------------GLSPAISIEQKTTSRNPRSTVGTVTEIH 109

Query: 607 DHVRKCFA 614
           D++R  +A
Sbjct: 110 DYMRLLWA 117