Pairwise Alignments

Query, 352 a.a., putative ABC transporter permease protein from Pseudomonas putida KT2440

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  162 bits (409), Expect = 2e-44
 Identities = 114/362 (31%), Positives = 180/362 (49%), Gaps = 47/362 (12%)

Query: 1   MTAYILRRLLLIIPTLLAILLVNFAIVQAAPGGPVEQAVARLQGLGGGAPGARAEVVHGE 60
           M ++ILRR++LIIP  + + L+ FA++   PG P+                    V+ GE
Sbjct: 1   MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPIL-------------------VMAGE 41

Query: 61  SRATRGLDPKLIEEIKRQYGFDKSAPERLWLMLGQYARLDFGNSFFRGAKVTDLILDKLP 120
               RG+ P     +  Q G D+   E+    LG+  + D GNS      V +      P
Sbjct: 42  ----RGVSPARHAMLMTQLGLDRPLWEQYLTYLGKALQGDLGNSIVTRQPVIEEFKTLFP 97

Query: 121 VTLSLGFWATLITYLVSIPLGIRKAMRHGSRFDAWSSALIVIGYALPSFLFALLLIVLFA 180
            T+ LG +A +   L+ IP G+  A++ G+  D     + + GY++P F + LLLI+L +
Sbjct: 98  ATIELGVFAMVFAVLIGIPAGMLAAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVS 157

Query: 181 GGTSLNWFPVRGLVS-----DNFDELSLL--------GKVADYFWHLVLPVAALVIG--G 225
           G   L W PV G +      D      L+        G       HL+LP  A+V+G   
Sbjct: 158 G--ILGWTPVSGRIDSIMWIDTVTGFMLIDSLLSDEPGAFLSAVHHLILP--AIVVGTIP 213

Query: 226 FATLTLLTKNAFLDEVSRQYVVTARAKGLSERRVLYGHVLRNAML--LVVAGLPQALITV 283
            A +  +T++A L+ +   YV TARAKG+S  RV+  H LRNA++  + V GL      V
Sbjct: 214 LAVIARMTRSAMLEVLREDYVRTARAKGVSPGRVVMVHALRNALIPVITVIGLQTG---V 270

Query: 284 FFAGSLLIEVIFSLDGLGRMSYEAAVSRDYPVVFGTLFIFTLAGLLIRLIGDLSYTLLDP 343
             AG++L E IF+  G+G+   ++   RDYP V G + + +   +L+ L+ D+ Y +++P
Sbjct: 271 LLAGAILTETIFAWPGVGKWLVDSINRRDYPAVQGGILLISTVVILVNLLVDVLYGVINP 330

Query: 344 RI 345
           RI
Sbjct: 331 RI 332