Pairwise Alignments

Query, 481 a.a., putative transcriptional regulator from Pseudomonas putida KT2440

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  239 bits (609), Expect = 2e-67
 Identities = 151/392 (38%), Positives = 213/392 (54%), Gaps = 33/392 (8%)

Query: 101 NGRPILLDMLDTPNEPLVVMRLPIHDDQGALIGAIGFALFDELRSLSPLLKRYASMQQEL 160
           +G+ +L  +L   +E L V+ +  H D    + A+    +D +       +   ++ + +
Sbjct: 60  SGQNLLSSVLHQDSE-LPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAI 118

Query: 161 ASTRSQLRARQAKYSFA-------QFVGSSAPSLEAKRRARRGAGSDSPVLLLGETGTGK 213
              R  L  RQ K S         + +G +A     +    + A + + +LL GETGTGK
Sbjct: 119 EKRRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGK 178

Query: 214 ELLAHAIHAASARAHRAFVSINSAAIPETLLEAEFFGTAPGAFTGADRKGRSGKLQLAEG 273
           EL+A ++H  S+R  + FV+IN  A+PE L+E+E +G   GAFTGAD + R GK + A+G
Sbjct: 179 ELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSR-RVGKFEHAQG 237

Query: 274 GTLFLDEIGDMPLALQSKLLRVLQEKEYEPVGSNQMLRSDVRIIAATSIDLQAAMARGAF 333
           GTLFLDEI  MP+  Q +LLRVLQE+  E +GSN+++  D+R+IAAT IDL+ A A G F
Sbjct: 238 GTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKF 297

Query: 334 RADLYYRLNVLPIDVPPLRQRLEDLPALCEAILAELGSQY-----ELEAEAQQLLARHAW 388
           R DLYYRLN++ + +PPLR+R ED+PAL    L    ++Y      L A   Q L  H W
Sbjct: 298 RQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDW 357

Query: 389 PGNIRELRNVLERATLLADQPRLGVADLRAALGPLSPLAEAPVRQS----YREACEAFER 444
           PGN+RELRN  ER  L               LG L+  AE+   +S      E    FE+
Sbjct: 358 PGNVRELRNAAERYVL---------------LGKLAQFAESHEPKSKLLGLNEQVAEFEK 402

Query: 445 GLIAGALAEQGGKVPEAAAALGLGRSTLYKKM 476
            L+   L E GG +      L L R TLY KM
Sbjct: 403 SLLEQTLIECGGSIKATMERLHLPRKTLYDKM 434