Pairwise Alignments
Query, 1089 a.a., putative Pyocin R2_PP, tail length determination protein from Pseudomonas putida KT2440
Subject, 950 a.a., Phage tail tape measure protein TP901, core region from Synechococcus elongatus PCC 7942
Score = 119 bits (299), Expect = 8e-31
Identities = 213/1006 (21%), Positives = 367/1006 (36%), Gaps = 151/1006 (15%)
Query: 123 LKSNIGRAVVATGAAAVPTMISANYQAIIRDIAIKADIANKPEEQQLTRTVIG------T 176
++++ +A+ A AA +I + QA+ + + ADI +G +
Sbjct: 46 VRNDAFQALAAASAAVGAGLIYSTKQAVAFESQL-ADIGKTAGSSAAELKALGADLLALS 104
Query: 177 AKD-TGMSRNDVADLVNQLVGAGMDLDKALSYAPVAAKFAVGQGASGVDTASMIQALEQN 235
A+D T S +++A + LV G++L A++ + A ++ D L+
Sbjct: 105 ARDRTNQSASNLASGIQDLVAQGLELKDAIASIETLGRVATATNSNLTDITKTGFQLQNA 164
Query: 236 AKISDPKVMQQALEAIAYQGQAGSFEASDMAKWFPQLLAGMEKNGITGLDAVTSLGSMLQ 295
KI P ++ +A+AY G+ G+FE DMA++ P + A G+TG + SL +M+Q
Sbjct: 165 LKIK-PTELKATFDALAYAGKQGAFELKDMAQFMPTIAAAAGSLGVTGREGAVSLAAMMQ 223
Query: 296 VQMKTAGSSDEAANNFKNWMEKIGAGDIKKAYSDVGIDYQASLNTGLQKGMNVIEASMAL 355
+ + A + +AA + M K+ A D K + G++ + L G+N +EA++
Sbjct: 224 MVRRDAPDAGQAATRLTDAMLKMTAPDAVKRFKKFGVNIEQVLKDAKANGINPMEAAVET 283
Query: 356 AMRYVEKTDPAKAKQIKDAQAKIDKEVDPEKAKAALEALEKTLRTGDIFADMQVKAALTA 415
+ T + G IF D + K AL +
Sbjct: 284 LFKVTG---------------------------------GDTFKLGQIFGDKEAKLALMS 310
Query: 416 YGQNRGLYEELKADS--KKASGILDKNLAERRETSAQQWAELGQAVDDSMRSIGDAIRPA 473
+ R Y +L+ D+ A+G +D + T A+Q L + SIG A+ P+
Sbjct: 311 LMKYRAEYTKLRDDAGGSIAAGTVDADYQRSLGTFAEQMKALQNTGERLAISIGTALLPS 370
Query: 474 TDMAAQGLTKVAHGITSLSDQFPSIAMG---IGGITAAVIAFLSARSALRVGRGVFNIAM 530
+ A +T V G+ ++ P + G I G+T + A L A+ GV +
Sbjct: 371 LNSLANVVTPVIEGMARWAETNPGLMKGIVAIAGLTVGLTAALPLIGAVVAAIGVIGGPI 430
Query: 531 GRGLEGFAGRAGKAERAPIKLPKTGSKVVDTGLGLLGKVFSAGSKGAAQADDPGAAA--- 587
+ G A + + LG G V AG+ Q G
Sbjct: 431 TLAVLGIGA-------AIALVIAYWDDLKQVALGFWGSVKQAGASDLFQGIRQGLTGVMT 483
Query: 588 --NDTQRVFVVNADAIGGIGSSVANSGPARGSRRSRRRERRRAARQGAPVRPAPAVEAPK 645
++ +R +V G VA + +R GA + PA A
Sbjct: 484 LLSEAKRFWVA---LFSGNEQEVAAAA------------QRIGQTIGAVILPAVA----- 523
Query: 646 PAKAAVAKVRPLPAALSALTAADDLGKVARSVRGVSRLAKNLPGGNIIDAGAAAIDVALN 705
++ ++ + + L R++ G+ A + G ++ AAI
Sbjct: 524 QVWLSIGRMAAMGVVALGRSFITGLAGAMRAMPGIVMGAARMAGTVLVTLMQAAI---AT 580
Query: 706 AETKDEKAEGYGGAAGSLAGTLAGAAAGAAIG---SVVPVIG-------TAVGGAVGAVL 755
+ ++ G G+A + + A A+G S +P +G T V G ++
Sbjct: 581 VGSLLQQLPGIAGSAFAGITSQFRAVWDQALGVVRSFLPQMGAILFPLPTLVIGIFQKIV 640
Query: 756 GGMGGESFGGWLG--KRWFGDEPADDQAEPESPPALGKALRVTVMPAKEVEPEPATAPVK 813
G+ F + + F A ++ P +G+A+ T++ + + A V+
Sbjct: 641 PGI-ASVFAQMVAQIQGAFQQVVAFIRSVPSMLAGVGEAIIQTIIDGVKAKAGELLATVQ 699
Query: 814 ADPA----------VSYDPRDPASKDPVVLPALAADKVRFPGADLVRPPASPESPADPAA 863
A P +K + +P VR GA L+R P + A AA
Sbjct: 700 QSFARVRELMPFSDAKRGPFSTLTKSGMAIPGTLGIGVR-RGAGLLRRPLVAAATAAMAA 758
Query: 864 PEAQPEPSVPKLGDTVREVASPAPVEPAVSYDPRDPASKDPFLLPALTANKVRFPGAGLV 923
A P++ T+ + PA +PA+ P +P T N +
Sbjct: 759 MGAVQAPAIAIAAPTLPQ-PLPALTQPAMGAPKTGPVLARQ-AVPLQTENAGSQQLVASI 816
Query: 924 RPQAEPEPPTPKLGAAVREAAPAPVPAKPVVSYDPRDPASKDPFLLPAMTANKVRFPGAD 983
P + P P A+ AP VPA +V S+ LPA T
Sbjct: 817 SPAIALQVPAP----AIATPAPISVPAPQIV--------SQPSIALPAPTI--------- 855
Query: 984 LVRPQPQPEPPAVLGDVVREMAKAAPSAPKLPEV--------PPPAKASPPPAPKVDNTF 1035
V A+ A + ++PEV P PA PAP+ D
Sbjct: 856 -----------VAQASVATPEARFALTEVRIPEVNSTPTIAAPMPAPVVVSPAPRSDRRA 904
Query: 1036 TFAPVMPLTVHGDVKDPNQLLNEMANGMRGLFDAWQREVAARTSSA 1081
P+T++ P Q +A +R +FD RE +A
Sbjct: 905 PINITAPITINA---GPGQDARSIAAQVRQVFDDLMREAELNQRAA 947
Score = 34.7 bits (78), Expect = 3e-05
Identities = 82/369 (22%), Positives = 135/369 (36%), Gaps = 54/369 (14%)
Query: 1 MAGKV-ALSLVIGGAVASSLGAAFKTAENGIQKLEAKGNKAKVLKSTIGETIKLREEWKR 59
MAGK ++L IGG VA+SLG++ A+ + L A+ K + + +
Sbjct: 1 MAGKAFQVTLEIGGRVAASLGSSIARAQGQLNTL-ARATKTGFMGVVRNDAFQALAAASA 59
Query: 60 AHDSGAAGADKLLRKLDSNLDSLRK----QGIEVGKLGREYQRLG---REARAADLQLKG 112
A +G + K +S L + K E+ LG + L R ++A G
Sbjct: 60 AVGAGLIYSTKQAVAFESQLADIGKTAGSSAAELKALGADLLALSARDRTNQSASNLASG 119
Query: 113 HQQLQAGKESLKSNIGRAVVATGAAAVPTMISANYQAIIR-DIAIKADIANKPEEQQLTR 171
Q L A LK I ++ G A T ++N I + ++ + KP E + T
Sbjct: 120 IQDLVAQGLELKDAIA-SIETLGRVATAT--NSNLTDITKTGFQLQNALKIKPTELKATF 176
Query: 172 TVIGTAKDTGMSRNDVADLVNQLVGAGMDLDKALSYAPVAAKFAVGQGASGVDTASMIQA 231
+ A G +L + P A A G +G + A + A
Sbjct: 177 DALAYAGKQG----------------AFELKDMAQFMPTIAAAAGSLGVTGREGAVSLAA 220
Query: 232 LEQNAKISDPKVMQQALEAIAYQGQAGSFEASDMAKWF----PQLLAGMEKNGITGLDAV 287
+ Q + P Q A + + +A K F Q+L + NGI ++A
Sbjct: 221 MMQMVRRDAPDAGQAATRLTDAMLKMTAPDAVKRFKKFGVNIEQVLKDAKANGINPMEA- 279
Query: 288 TSLGSMLQVQMKTAGSSDEAANNFKNWMEKIGAGDIKK----------------AYSDVG 331
++ ++ +V T G + + F + K+ + K A V
Sbjct: 280 -AVETLFKV---TGGDTFKLGQIFGDKEAKLALMSLMKYRAEYTKLRDDAGGSIAAGTVD 335
Query: 332 IDYQASLNT 340
DYQ SL T
Sbjct: 336 ADYQRSLGT 344