Pairwise Alignments

Query, 609 a.a., DNA cytosine methyltransferase family protein from Pseudomonas putida KT2440

Subject, 557 a.a., prophage LambdaSo, type II DNA modification methyltransferase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  375 bits (963), Expect = e-108
 Identities = 236/604 (39%), Positives = 324/604 (53%), Gaps = 80/604 (13%)

Query: 21  RELYVDLFAGAGGASSGGARAY-RDPDIAINHNPIAIAVHRANHRKTRHYICDIYEVDPL 79
           R L VD FAG GGAS+G A A  R  DIAINH+  AIA+H ANH +T HY   +++VDP+
Sbjct: 2   RGLIVDNFAGGGGASTGMAWALGRSVDIAINHDQDAIAMHSANHPETLHYCESVFDVDPV 61

Query: 80  EATGGQPVGILWASPDCRHFSKAKGGAPRSKAVRSLPWVVVHWVFATRPRLLLMENVEEF 139
           +AT G+PV + W SPDC+HFSKAKG  P +K +R L WV + W    RPR++++ENVEEF
Sbjct: 62  QATAGKPVALAWFSPDCKHFSKAKGTKPVNKEIRGLAWVTIRWAMKVRPRVIMLENVEEF 121

Query: 140 QAWGPL-----NDEGKPIKSEMGRTFKAFVACLTTGLPADHPDMSEVMDCIGQWVPMDAL 194
           + WGPL      D   P     G TF AFV+ L+TG+ ADHP ++E ++ +G  +    L
Sbjct: 122 KTWGPLIQCPVTDAMHPCPERKGETFNAFVSMLSTGVDADHPALTECVETLG-LLDSAKL 180

Query: 195 VRGLGCNVEWRERRASNAGSPTIRKRLFLIGRTDGRPIVWTKPKR----HENPKPGQ-LP 249
           ++GLG  VE+RE RA + G+PTIRKRLF+I R DG+PIVW +P       E  K G+ LP
Sbjct: 181 IKGLGYKVEFRELRACDYGAPTIRKRLFMIARCDGQPIVWPQPTHGAPDSEAVKSGKLLP 240

Query: 250 WRTAAECIDFSDLGKSLFARKRPLVDNTCRRVAKGFWRHTVMAEQPFVLQLDEQKLAAAS 309
           WRTAAECID+S   KS+F RK+PL +NT RR+AKG  R  + A++PF++  D Q   A  
Sbjct: 241 WRTAAECIDWSLPCKSIFGRKKPLAENTLRRIAKGIQRFVIDAKEPFIVPNDVQ--LAPF 298

Query: 310 LTEFANASTQRTFSAGEPLRTQVAQIKGGHFALAAAHL--------THLTHHGDRSGYPV 361
           +TE ANAS+QR     EPLRT  AQ+KGGHFA+    L        T          +  
Sbjct: 299 ITEHANASSQRNMPVNEPLRTICAQVKGGHFAVVQPVLEKVNDNIPTFTEWFAKTKNFGG 358

Query: 362 S-EPTRTITGANRGEQALITASMITLRKGSTSSG----MDHPVNALTTGSGHHAVAACHF 416
           S E   ++ G ++    ++TA+ I    G   +G    +++P+  +TT   H+A+   H 
Sbjct: 359 SYEEYVSLYGDDQLTDPVLTAANICKHYGGNYTGPGDDLNNPLPTVTT-VDHNALITSHM 417

Query: 417 EQANGGFYKGDGRAAKVPLSTILGRGTNQRLASAYLVKYYGTGGQWQDMGEPMHTLPTKE 476
            +  G      G     P  TI   G +     A+ +KYYG         EP+HT+ T +
Sbjct: 418 IKLRG---TNIGFPMDEPAHTITAGGLHLGEVRAFFIKYYGNEQDGVACNEPLHTITTND 474

Query: 477 RMALVTVVQVPAAILPPELLVKARKCAHFLHKYLPEHFPDLVDLVLLGEHALVDFTLRML 536
           R  LV +   P                                      + ++D  +RML
Sbjct: 475 RFGLVMIKGEP--------------------------------------YQIIDIGMRML 496

Query: 537 KAPELKLAQGFSPDYILDRGLFENQETGHLEWRPINKTDQIRLIGNSVCPDEAEDLIAAN 596
           +  EL   QGF+P+YI+      N   G       +K  Q+  +GNSV P  AE L  AN
Sbjct: 497 EPHELFACQGFNPEYII------NNYNG-----KSSKKQQVARVGNSVPPQFAEALTRAN 545

Query: 597 AKDL 600
             +L
Sbjct: 546 LPEL 549