Pairwise Alignments

Query, 299 a.a., CnmA from Pseudomonas putida KT2440

Subject, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  129 bits (325), Expect = 6e-35
 Identities = 87/286 (30%), Positives = 136/286 (47%), Gaps = 4/286 (1%)

Query: 12  LLQLFDVLYQCRSVTRAAEQLGQSQPTISIWLARLREQLNDPLFVRTPGGMAPTPRADQL 71
           LL   D L   R +T AA ++  SQP +S  +ARLR    D LF      + PTPRA+ L
Sbjct: 10  LLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPRAEAL 69

Query: 72  IGPCREVLESLR-RLTAWEPQFIAATAQRRFRLCVSDASHITLLPSILNHLRSHAPGIRL 130
               R+ L  ++  + AW+P    A + RRFR+ +SD   +     I+  +   APG+  
Sbjct: 70  APAVRDALLHIQLSVIAWDP-LNPAQSDRRFRIILSDFMILVFFARIVERVAREAPGVSF 128

Query: 131 EAARIDGNTESALESGEADLAIGFVPWLGGGMYQQVLFEQDWVCLSNPQHPRLGDGMSLE 190
           E   +D +    L  G+ D  I    ++     +  LF++  VC+  P + +L   +S E
Sbjct: 129 ELLPLDDDPHELLRRGDVDFLIFPDVFMSSAHPKAKLFDEALVCVGCPTNKKLLGNISFE 188

Query: 191 RYRAEGHVQISFGTGQK--LLEAGLARAGIERRIMLELPAFLGLGKIIGTTDLLGTLPRH 248
            Y + GHV   FG   K  + +  L   G  RRI L +P F  + +++  T+ + TLP  
Sbjct: 189 TYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLIPRLLSGTNRIATLPLR 248

Query: 249 IGQTLADMHGLQVHDCPFEVEGFTVKQHWHARYHQDNGNRWLREVV 294
           + +       L++   P     FT    W A ++ D GN WLRE++
Sbjct: 249 LVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLREIL 294