Pairwise Alignments

Query, 301 a.a., Tn4652, transposase subunit B from Pseudomonas putida KT2440

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  128 bits (322), Expect = 1e-34
 Identities = 78/252 (30%), Positives = 133/252 (52%), Gaps = 4/252 (1%)

Query: 38  DRSRRSARAIRDEELAVQ--IHRVWQENYEVYGARKVWRQMHREHQVVARCTVERLMREM 95
           D  +R A  I  E L +   + ++++++    G R++ +++ +E   V R  V ++M  +
Sbjct: 10  DWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRL 69

Query: 96  GLCGVTRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIV 155
            L    R     TTQ    +A   +L+   F     NQ+W  D T++ T +G+ Y+A ++
Sbjct: 70  RLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGWMYLAVVM 129

Query: 156 DVYSRFIVGWRVSRHMRTEFVLDALEQALHTRRPEPHRLVHHSDRGSQYLSIRYSERLGE 215
           D+YSR IVGWR+ + M T+ +  AL +A + R+P    LV HSDRGSQY S ++   L  
Sbjct: 130 DLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQP-ARGLVFHSDRGSQYTSKQFGRLLSS 188

Query: 216 AGIEPSVGNTGDSYDNALAETINGLYKTELIHKRGPWKSVDSLEWETLKWVTWFNHQRLL 275
            GI  S+G+ G  +DNA+ E   G  K + I K     + + ++ +   ++ ++N +RL 
Sbjct: 189 YGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQ-PTREFMKQDVTAYIKYYNLERLH 247

Query: 276 EPIGNRPPAEFE 287
               +  P EFE
Sbjct: 248 SANNDLSPVEFE 259