Pairwise Alignments

Query, 467 a.a., putative sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  160 bits (405), Expect = 1e-43
 Identities = 113/290 (38%), Positives = 163/290 (56%), Gaps = 32/290 (11%)

Query: 192 EIEERKQLESQLVQSEKLASLGQMAAGVAHEINNPIGFVSSNLGTLGGYFQQLVAMLDAY 251
           +I +R  +E  +VQSEK+ S+G +AAG+AHEINNP+G +  N   +    ++L   L+  
Sbjct: 393 DITQRINMEEMMVQSEKMLSVGSLAAGMAHEINNPLGAILHNAQNIR---RRLSPELERN 449

Query: 252 REAELMLGANETTGRLQRLREQTELEFLMEDIPILIKESKDGIGRVAHIVKDLKDFSRVD 311
           REA     A ET  RL+ + +  +      ++P L+   +    R A IV  +  FSR+ 
Sbjct: 450 REA-----AEETGVRLEAVNQYLQ----RREVPQLLDGIQQAGSRAAKIVSHMLSFSRMS 500

Query: 312 SAQQWQLAD--LQQGIDSTLNIVASELK-------HKADLVKRYQP-LPPVECLPSQINQ 361
           + Q   LAD  L   ID  L I  ++            D+V+ + P +  V C+ +++ Q
Sbjct: 501 NRQ---LADCHLPVLIDQALEIAGNDFALMEGFDFKAIDIVRDFDPRVDRVPCIGNELEQ 557

Query: 362 VIMNLVLNAAQAMGP----ERGTITLGTAHQGAWVCIEVADTGAGIAPENIKK-IFDPFF 416
           V++NL+ NAAQA+      E G I L T     W  I+V D G GI PEN++K IF+PFF
Sbjct: 558 VLLNLLKNAAQAIHAHQVGEPGQIILRTRLNPPWAEIQVEDNGGGI-PENVRKRIFEPFF 616

Query: 417 TTKPVGQGTGLGLSLSYGIV-KKHGGEITVSSQVGVGTTFRVQLPVKQSA 465
           TTK VGQGTGLGLS+SY I+   H G++ V  Q G GTTF ++LP+   A
Sbjct: 617 TTKEVGQGTGLGLSVSYFIITNNHQGQMEVQCQPGHGTTFTLRLPLNSPA 666