Pairwise Alignments

Query, 416 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 418 a.a., putative DNA modification/repair radical SAM protein from Phaeobacter inhibens DSM 17395

 Score =  470 bits (1209), Expect = e-137
 Identities = 235/413 (56%), Positives = 306/413 (74%), Gaps = 7/413 (1%)

Query: 1   MNTQYRRSATMQLIAKLGILADAAKYDASCASSGAPKRNSRGADGLGATNGMGICHSYTP 60
           M T   +     L  KL IL+DAAKYDASCASSG+ KR+SR   GLG+  G GICH+Y P
Sbjct: 1   MRTYIEQMTRQTLDQKLAILSDAAKYDASCASSGSTKRDSRDGKGLGSNEGTGICHAYAP 60

Query: 61  DGRCVSLLKVLLTNFCLYDCQYCVNRRSSNVPRARFSPEEVVRLTLDFYRRNCISGLFLS 120
           DGRC+SLLK+L+TNFC+YDC YCVNR SSNVPRARF+ +EVV+LT++FYRRN I GLFLS
Sbjct: 61  DGRCISLLKILMTNFCIYDCTYCVNRVSSNVPRARFTVDEVVKLTIEFYRRNYIEGLFLS 120

Query: 121 SGIIRSADYTMEQLIRVARLLREEHSFRGYIHLKAIPDADPLLIEEAGRLADRLSVNIEL 180
           SGIIRS D TM +++++AR LR+E +FRGYIHLK IPDA P LI EAG LADRLS+N+E+
Sbjct: 121 SGIIRSPDATMSEMVQIARKLRQEENFRGYIHLKTIPDAAPDLIAEAGLLADRLSINVEM 180

Query: 181 PTDASLKRLAPEKQGHTIRQAMGVIHQGQQAVANEP----RAPRFTPAGQSTQVIVGADS 236
           P+DA+++  APEK    IR+AMG +   ++A  +      R PRF PAGQSTQ+I+GAD 
Sbjct: 181 PSDAAVREHAPEKDPGQIRKAMGDVRLRKEAAKDRSHTGRRPPRFAPAGQSTQMIIGADG 240

Query: 237 TDDSTLLRNAESLYQGYGLKRVYYSAFSPIPDSPGSVPLAAPPLLREHRLYQADFLLRGY 296
           ++D+ +L  +  LY  Y LKRVYYSAFSPIPDS   +PL +PPL REHRLYQAD+LLR Y
Sbjct: 241 SNDAMVLGQSTRLYSSYKLKRVYYSAFSPIPDSSAKLPLISPPLQREHRLYQADWLLRFY 300

Query: 297 GYKAGEL--LGHSGNLALDIDPKLAWALANRDVFPLDVNRAEPALLARIPGIGLRSVQRL 354
            ++  E+  +   GNL L IDPKLAWALA+R+++PLDVNRA   +L R+PG G+++V R+
Sbjct: 301 DFQLDEITSVTPDGNLDLHIDPKLAWALAHREMYPLDVNRASREMLLRVPGFGVKTVNRI 360

Query: 355 VALRRERRIRYDDLIQLRCVLDKARPFIVTSDYRPAQAELRSGLLRARLSEPP 407
           ++ RR R +RY+DL+++   + KAR F+V   + P +    S  LRA+ + PP
Sbjct: 361 LSTRRHRSLRYEDLLRIGASMKKARAFVVAGGWTPGRL-TDSVDLRAQFAPPP 412