Pairwise Alignments

Query, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

Subject, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 75.9 bits (185), Expect = 4e-19
 Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 2   HDLDDHQWRELLAR-----LRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRA 56
           +D+D  +  E L R     L R+A WL ++   A+DLVQ T  RA    D   D  A +A
Sbjct: 19  NDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKA 78

Query: 57  WLFTILYRQFLDGKRRERLHARWLSWFGRNEHDDEPVGDNLETIVLAQADLQAFARLTAE 116
           WL TIL R+  + +R ER   +       ++HD E    + E         Q   +L  E
Sbjct: 79  WLITILRRE--NARRFER---KQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQ-ILKLDVE 132

Query: 117 QRALLLLVSIEGLSYKEAAQALGIPIGTVMSRLSRARNALRELTEGNPQPP 167
            R LL L  + G S +E A  L +   TVM+RL RARN L+E+ +G+   P
Sbjct: 133 YRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEHYP 183