Pairwise Alignments

Query, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 47/317 (14%)

Query: 20  SNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNGEMA---RIQVMADTG 76
           S   A Q + V  +GG       E   K F  Q+G  +  S +    +   +++++  TG
Sbjct: 17  SQVYAEQTLNVYAWGGY----LPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLLKGTG 72

Query: 77  NVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIPAAA------QDCGSAALVWSV 130
              +DVV      + +   EG+   +D  ++ +  + +P         Q+  S   +W +
Sbjct: 73  ---YDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAHDPQNKFSLPYIWGI 129

Query: 131 A-IAYDRSKLAQAPASWADFWDVDKYPGKRGLRKRAVYNLEFALLADGVKVEDVYRVLST 189
             + Y+ S L      WAD WD               Y  +  L+ D   + DV+ +   
Sbjct: 130 TGLYYNSSTLPNGITKWADLWDKQ-------------YEQQVMLIDD---IRDVFGMALK 173

Query: 190 PAG----------VERAFAKLSELKPHIQWWDAGAQPAQWLAAGDVVMTSTYSGRIAVAA 239
             G          +++A+  L  LK ++  +++ A    +++ G+  +   ++G      
Sbjct: 174 LNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVS-GEATLGMQWNGNAYQGQ 232

Query: 240 QQGSPLAVVWP--GSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRYVQQIPYGPTN 297
            +   L  V P  G++  MD + I  GS+++  A + I +  QP+ Q   VQ + Y  + 
Sbjct: 233 VEMPELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYA-SA 291

Query: 298 TQAAARLDPALANWVPT 314
           T+    L PA     PT
Sbjct: 292 TKGGRALLPAELRDNPT 308