Pairwise Alignments

Query, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 36/293 (12%)

Query: 7   VTGLCAALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNGEM 66
           + G   AL  L  + A   +++V + +G       +  I + F  + G ++I S Y    
Sbjct: 8   LAGSACALSLLSGTAAAEDKELVFMNWG----PYINSGILEQFTKETGIKVIYSTYESNE 63

Query: 67  ARIQVMADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELI---------PAA 117
             +     T N  +D+V      + +  DEG+ +++D  +L +   L          P  
Sbjct: 64  T-LYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNN 122

Query: 118 AQDCGSAALVWSVAI---AYDRSKLAQAPASWADFWDVDKYPGKRGLRK--RAVYNLEFA 172
                    +  +A+    YD +       SW D W  +   G+  L    R V+++   
Sbjct: 123 DYSIPHVVAITGLAVNTDMYDPNDFQ----SWGDLWKPE-LKGQLMLMDDTREVFHIALR 177

Query: 173 LLA-DGVKVEDVYRVLSTPAGVERAFAKLSELKPHIQWWDAGAQPAQWLAAGDVVMTSTY 231
            L   G   +D          ++ A+A+L +L P++  +++    A +L+ G+V +   +
Sbjct: 178 KLGYSGNSTDDKQ--------IDEAYAELQKLMPNVLVFNSDNPAAPYLS-GEVGLGMLW 228

Query: 232 SGRIAVAAQQGSPLAVVWP--GSLYGMDYWAIIKGSRHVDQAKRLIAYANQPD 282
           +G  A A ++G P+ +V+P  G +  +D +AI  G+++VD A ++I +  +P+
Sbjct: 229 NGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPE 281