Pairwise Alignments

Query, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 74.7 bits (182), Expect = 3e-18
 Identities = 75/309 (24%), Positives = 141/309 (45%), Gaps = 24/309 (7%)

Query: 8   TGLCAALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNGEMA 67
           + LCAA  AL  +NA A  Q +   Y     +     + + F  + G ++I S Y    +
Sbjct: 8   SALCAA--ALFTTNAMAKDQEL---YFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNES 62

Query: 68  RIQVMADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIPAAAQ---DCG-- 122
               +   G   +D+V      + +   EG+ + +D  +L H  +L P       D G  
Sbjct: 63  MYAKLKTQG-AGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNKPFDPGNK 121

Query: 123 -SAALVW-SVAIAYDRSKL-AQAPASWADFWDVDKYPGKRGLRKRAVYNLEFALLADGVK 179
            S   +W +  I  +   L  ++  +W D WD  K+ G+  L   A      AL   G  
Sbjct: 122 FSIPYIWGATGIGINTDMLDKKSLKNWGDLWDA-KWAGQLMLMDDAREVFHIALSKLGYS 180

Query: 180 VEDVYRVLSTPAGVERAFAKLSELKPHIQWWDAGAQPAQWLAAGDVVMTSTYSGRIAVAA 239
                   + P  ++ A+ +L +L P++  +++   PA    AG+V +   ++G   +A 
Sbjct: 181 PNT-----TNPKEIKAAYRELKKLMPNVLVFNSDF-PANPYLAGEVSLGMLWNGSAYMAR 234

Query: 240 QQGSPLAVVWP--GSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRYVQQIPYGPTN 297
           Q+G+P+ ++WP  G+++ MD  +I  G+++++ A ++I +  +P+   +   +I Y PT 
Sbjct: 235 QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGY-PTP 293

Query: 298 TQAAARLDP 306
            + A  L P
Sbjct: 294 VKTAHDLLP 302