Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 73.2 bits (178), Expect = 7e-18
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 16/230 (6%)

Query: 50  LRADGFAPNSSSLYVNAIRGVMNEAWRQGLI--DHEQLLRIREVKPATGSRLPPGRNLRR 107
           L    + P S +  ++AIR +     R+ +   D   LL    V P   +RLP  ++L  
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALL----VSPKLPTRLP--KDLSE 119

Query: 108 SLIRELMDVCAADPR-PQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKG 166
           + +  L+   A DP+ P  +RD A++ LLY TG+R +E V + ++ +      ++V+GKG
Sbjct: 120 AQVEALLS--APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKG 177

Query: 167 NHQLVKYAPPWAFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITKHAIYYI 226
             + +      A E ++ +L+  R  L  G +    +F    RG  +TR     H I + 
Sbjct: 178 GKERLVPMGENAIEWIETFLQQGR-SLLLGEQTSDIVFPS-SRGQQMTRQTFW-HRIKHY 234

Query: 227 ARQRGAQVGVKIMPHDFRRAFITRVIE-EHDLSIAQKLAHHANIQTTAIY 275
           A   G  V  K+ PH  R AF T ++    DL + Q L  H+++ TT IY
Sbjct: 235 AVIAGIDV-EKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIY 283