Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 45  ALVAALRADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRN 104
           A +A + A G AP S +  ++ +R        +G    +  + +    P  G  LP  R 
Sbjct: 71  AYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDS--PRLGRPLP--RV 126

Query: 105 LRRSLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVG 164
           L  + +  L+    A    +G+R   ++ LLY TG+R SE V + L   + +  ++ V G
Sbjct: 127 LSEAEVDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRG 186

Query: 165 KGN-HQLVKYAPPWAFEKLQAWLELRRQDLPAGA----EDDPFLFNRIRRGNHITRARIT 219
           KG+  +LV    P A   L+ WL  R   LPA        D FLF       H+TR    
Sbjct: 187 KGDKERLVPLGLP-ARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFA 245

Query: 220 KHAIYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 275
           K  +  +A + G     ++ PH  R  F + ++    DL   Q L  HA+I TT IY
Sbjct: 246 K-MLGELALRAGID-PARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIY 300