Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pedobacter sp. GW460-11-11-14-LB5

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 63/254 (24%), Positives = 124/254 (48%), Gaps = 18/254 (7%)

Query: 42  HVIALVAALRADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPP 101
           H+ + ++ L   G   ++ +  ++ ++   +    + +I ++    +    P    +LP 
Sbjct: 55  HLKSFISWLNDLGMQASTQARVISGLKAFFSYLMLEEVISNDPTALLEA--PKLSRKLPD 112

Query: 102 GRNLRRSLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQ 161
             N+    I EL+    A  + +G+R+ AI+ +LYG G+R +E  ++ +  V  +   ++
Sbjct: 113 TLNIYE--INELIAGIDAS-KSEGMRNKAIMEVLYGCGLRVTELTELRISNVFPQIEFIK 169

Query: 162 VVGKGNHQLVKYAPPWAFEKLQAWL-ELR-RQDLPAGAEDDPFLFNRIRRGNHITRARIT 219
           V+GKGN + +      A + L  ++ E+R   ++  G ED  FL NR         A+++
Sbjct: 170 VIGKGNKERLVPIGSVALKLLDIYINEVRVHANIKKGHEDFIFL-NRF-------GAKLS 221

Query: 220 KHAIYYIARQRGAQVGVK--IMPHDFRRAFITRVIE-EHDLSIAQKLAHHANIQTTAIYD 276
           + +I+ + +      G+K  I PH  R +F T +IE   DL   Q++  H++I TT IY 
Sbjct: 222 RISIFNLIKSLAISTGLKKTISPHTLRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYT 281

Query: 277 RRDDNERRRAVDRF 290
             D +  R  + +F
Sbjct: 282 HIDRDYLREVITQF 295