Pairwise Alignments

Query, 468 a.a., Outer membrane protein OprJ from Pseudomonas putida KT2440

Subject, 461 a.a., RND efflux system, outer membrane lipoprotein, NodT (NCBI) from Rhodospirillum rubrum S1H

 Score =  206 bits (524), Expect = 1e-57
 Identities = 154/460 (33%), Positives = 225/460 (48%), Gaps = 13/460 (2%)

Query: 8   VLPIVLALTLAGCSLTPTYQRPEAPVAAEWGDAA-GHTGHSVEQLDWQAFIVDPVLRQLV 66
           V P  LAL L GCSL P  +RP   + A +GDAA       +    W      P L  L+
Sbjct: 5   VFPAALALFLGGCSLVPDSERPALAMPAAFGDAAPAPAATPLADATWWRRFGSPELSALM 64

Query: 67  GTALDNNRSLRQTLLDIEQARAQYRIQRADRVPGLNASASGNRQHLPAALSSDGREGVSS 126
             A+  N+ L      + QARA     RA   P L+AS++ NR     A ++   E   +
Sbjct: 65  SDAMTGNQDLEAAFRRVAQARASLAGTRAGWFPTLSASSNANRSLHNTARTAAATE--KT 122

Query: 127 TYQVGLSLPEYEVDLFGRVKSLSDAALEQYLATEEVGR-AARIALIAEVSQAYLALDGAE 185
           TY VG  L  +EVDLFG+ ++ S  + E    ++ + R A  +++  EV+ AY+    A+
Sbjct: 123 TYDVGGDL-SWEVDLFGKTRA-SVLSAEATAQSQALARDALALSIQGEVATAYVTALAAK 180

Query: 186 RRQALTRQTLASREDSLALVGQRRAAGTATALDHQEALGLVEQSRAELEVTVRQQRQAYN 245
            R A+ R+ LA+  + LAL+  + + G+   L+  +    V    A L         A  
Sbjct: 181 DRLAIARENLATAREILALIETQVSIGSQAPLEQAQQRSTVAGIEASLPQLEADLAAAQT 240

Query: 246 ALVLLLGSAEAAKAMPAERPDEPMVLNDIVPGAPSALIERRPDILAAEHRLRARNADIGA 305
           +L +LLG A     + A   +  + L  I PG PS L+ERRPDI  AE  L A NADIGA
Sbjct: 241 SLAVLLGRAPQGFRIQAPGLNA-LALPAIAPGQPSDLLERRPDIREAEATLIAANADIGA 299

Query: 306 ARAAFFPRISLTGSFGTASAQMSGLFDGGSRSWAFMP-QLSLPLFDAGRNRAGLSLAEAR 364
           AR+AFFP ++L+     ASA +SG   GG+ +   +   L   +FDAG+  A L +A  R
Sbjct: 300 ARSAFFPTLTLS-----ASASLSGALSGGTTTAGSLAGNLLGTIFDAGKREADLEVARQR 354

Query: 365 KDSAVAAYEGAIQVAFREVADALAATDTLRREQAARRALADTSRETLTLAKARYEGGVDN 424
                A Y   +  A +E  DAL   DT  R + A       S E L +A+ +Y+ G  +
Sbjct: 355 WAELAATYRTTVLTALKEAEDALVTEDTGARREVALAEAVVQSTEALRIARTQYQVGDGD 414

Query: 425 HLRYLDAQRNSYVNEAAFIEASTQRQLALVNLFRALGGGW 464
            L  L AQ+    +  +  +A   R  + ++L +ALG GW
Sbjct: 415 FLAVLTAQQTVLSSRDSLAQARGDRFQSAIDLVKALGSGW 454