Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1048 a.a., multidrug-efflux system transmembrane protein from Sinorhizobium meliloti 1021

 Score = 1166 bits (3017), Expect = 0.0
 Identities = 588/1043 (56%), Positives = 772/1043 (74%), Gaps = 2/1043 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M  FFI RP FAWVVA+FI +AG++ IP LPV+QYP+VAPPQISI  +YPGAS++   +S
Sbjct: 1    MPSFFIDRPIFAWVVAIFIMIAGIIAIPLLPVSQYPDVAPPQISINTNYPGASSQDTYQS 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT +IE  LNG +GLLY+ES+ +S+G   +  TF+PGTDP  A VD+QNR+++ E R+P 
Sbjct: 61   VTRLIEDELNGVEGLLYFESSTSSSGSVSIDATFQPGTDPSQASVDIQNRVQRVEPRLPD 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG++V++A +GFLLI +LTST G+  D   L DY +RN+ +E+ RVPGVG+ Q FA
Sbjct: 121  PVRQQGVQVDEAGAGFLLIISLTSTDGSM-DAIGLGDYLSRNVLSEIQRVPGVGRAQLFA 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            +E +MRVW+DP K++G  L+  D+ +AI+ QN Q+ +GS G+ P    Q++TA + ++G 
Sbjct: 180  TERSMRVWLDPDKMLGLNLTAADVTAAIQAQNAQIASGSIGAQPNPITQQVTAPVVIKGQ 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L +PE F  IVLRAN DGS+VRL DVAR+ IG E+Y  S RLNG P+ A AVQL+P  NA
Sbjct: 240  LSSPEEFGAIVLRANADGSAVRLRDVARLEIGGESYTFSTRLNGSPSAAIAVQLSPSGNA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + T+  +K R+ EL++FFPEG+EYS+PYDTS FV V+IEKV+HTL+EA+ LVFLVMFLFL
Sbjct: 300  MSTSAAIKARMDELAEFFPEGLEYSIPYDTSPFVAVSIEKVLHTLVEAVGLVFLVMFLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QNVRYT++P+IVVPV LLGT  +M  +GFS+N++TMFGMVLAIGILVDDAI+VVENVER+
Sbjct: 360  QNVRYTIIPTIVVPVALLGTCAVMLAMGFSINVLTMFGMVLAIGILVDDAIIVVENVERI 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M+EEGL+P +AT KAM Q++GA+IGITLVLA+VF+P+AF  G+VGVIY+QFS+++ VSIL
Sbjct: 420  MSEEGLTPKDATRKAMKQITGAVIGITLVLASVFIPMAFFPGAVGVIYRQFSLTMVVSIL 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHHE-KAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
            FS  LAL+ TPALCA+ LK VP GHH  K GFFG FNRGF R +  Y+     +V R GR
Sbjct: 480  FSALLALSLTPALCASFLKQVPKGHHHAKRGFFGWFNRGFDRTSHGYTRAVGGIVRRTGR 539

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599
            +M+ Y+ +L  LG+++L+LP +F+P ED G+ +V +QLP  A+  RT    E  E     
Sbjct: 540  FMVIYLALLAGLGWAFLQLPSSFLPDEDQGFVIVMMQLPSEATANRTTEVIEQTETIFGQ 599

Query: 600  RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQFAANGDGAI 659
              AV     ++GFSF G G NA LAF T KDWS+RD   SA++         +   D   
Sbjct: 600  EKAVDTIVAINGFSFFGSGQNAGLAFVTLKDWSERDADNSAQSIAGRATMAMSQIKDAIS 659

Query: 660  TAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLAEA 719
             A+ PP I GLG +GGF+ RL DR GLG+ AL  ARDQLL  A+ + V+     EG+ +A
Sbjct: 660  FALSPPAIQGLGTTGGFSFRLQDRAGLGQAALAEARDQLLDLASQSKVLTGVRFEGMPDA 719

Query: 720  PQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMTPE 779
             Q+ ++IDREKA   GV+F  INST++T  GS+ +NDF NAGR QRV VQA++ +RM   
Sbjct: 720  AQVSVNIDREKANTFGVTFADINSTISTNLGSSYVNDFPNAGRMQRVTVQADETKRMQTA 779

Query: 780  SVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAMAEM 839
             +L L   N+NG  VP SAF   +W + P Q V YNGYP++RI+G+A+PG+S+G A+AEM
Sbjct: 780  DLLNLNVRNSNGGMVPLSAFADVEWVKAPTQTVGYNGYPAVRISGEAAPGYSSGDAIAEM 839

Query: 840  ERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTVMLI 899
            ERLV+ELP G GY WTG S QE  S  QA  L AL+ L+VFL L ALYESW+IP++V+++
Sbjct: 840  ERLVAELPAGFGYEWTGQSLQEIQSGSQAPLLIALSCLLVFLCLAALYESWSIPVSVIMV 899

Query: 900  VPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCDAAI 959
            VP+G +GAV AVT+  MPNDVYFKVGLI IIGL+AKNAILI+EFAKEL E+G SL D+ +
Sbjct: 900  VPLGVIGAVLAVTMRDMPNDVYFKVGLIAIIGLSAKNAILIIEFAKELREQGKSLIDSTL 959

Query: 960  EAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFVPVC 1019
            EAA LRFRPI+MTS+AF LGV+PLAIA+GA + SQRAIGTGV+GGM+SAT+L + FVPV 
Sbjct: 960  EAAHLRFRPILMTSLAFTLGVLPLAIATGASSGSQRAIGTGVMGGMISATVLAIFFVPVF 1019

Query: 1020 FVWVLTLLKRKPSPVQQAVEEAE 1042
            FV+V+ + +R  +  + A   +E
Sbjct: 1020 FVFVMKIFERGRAAPEAAKPASE 1042