Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 1007 bits (2604), Expect = 0.0
 Identities = 514/1039 (49%), Positives = 711/1039 (68%), Gaps = 5/1039 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M+RFFI RP FAWV+A+ + LAG+L I SLPV+QYPN+APP + I+A+YPGASAK + +S
Sbjct: 1    MARFFIDRPIFAWVIAILVMLAGVLAIKSLPVSQYPNIAPPTVVISANYPGASAKTLEDS 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT +IEQ + G   L Y  ST++  G AE+ +TF    D D+AQV VQN+L+ A   +PQ
Sbjct: 61   VTQVIEQRMTGLDNLRYINSTSDGFGNAEITLTFNAEADADIAQVQVQNKLQSAMPLLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG++V +++SGFL++    S  G+      +ADY   N+ + L RV GVG++  F 
Sbjct: 121  EVQAQGVRVNKSTSGFLMVLGFVSEDGSLTKND-IADYVGSNVQDPLSRVAGVGEITLFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            +  AMR+W+DP KL  Y L+  D+ +AIR QN QV AG  G  P    QEL AT++ Q  
Sbjct: 180  APYAMRIWLDPLKLTQYSLTTQDVIAAIREQNAQVSAGQLGGAPAVLGQELNATVSAQSR 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L+TPE F  I+L+++ +G+ V LGDVAR+ +G+E+Y + +  NG PA   A+ LA GANA
Sbjct: 240  LETPEQFRKIILKSDTNGAKVFLGDVARVELGAESYVVESFYNGRPAAGLAISLATGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TAT V+E++AE+  FFP G++   PYDT+ FV  +IE V+HTL+EA+VLVF++M+LFL
Sbjct: 300  LDTATRVREKIAEMKPFFPAGLDVVYPYDTTPFVKQSIEGVVHTLLEAVVLVFVIMYLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R TL+P+I VPV LLGT  I+   GFS+N +TMF MVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M EEGL PVEAT K+M Q++GA++GI L L+AVF+P+AFMSGS GVIY+QFS+++  ++ 
Sbjct: 420  MQEEGLGPVEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMA 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGH-HEKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
             S  +AL  TPALCAT+LKP+  GH H + GFFG FNR F ++T RY    + ++ R+ R
Sbjct: 480  LSVLVALILTPALCATMLKPLKPGHSHGQHGFFGWFNRSFEKMTSRYEGSVAAILKRSAR 539

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM- 598
             M  Y+ ++V  G+ ++R+P AF+P ED G     V LP  +S+  T    E ++KF   
Sbjct: 540  VMAIYLALVVATGWIFMRMPTAFLPDEDQGILFAQVILPTNSSQESTVKVLEKMDKFFRE 599

Query: 599  -SRDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRD-KAQSAEAETAAINAQFAANGD 656
              +D V + F V+GFSF+G G N  +AF   KDW+ R+ + Q   +        F+   +
Sbjct: 600  DEKDNVNSVFSVAGFSFAGMGQNMGIAFVGMKDWAVREGEGQDVFSLQGRAMMAFSQIKE 659

Query: 657  GAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGL 716
              + A  PP +  LG + GF   L D+ G G   LL AR+QLL  A  NP ++     G 
Sbjct: 660  AFVFAFAPPAVIELGTANGFDFYLQDKNGQGHAKLLEARNQLLGMAAQNPNLVGVRPNGQ 719

Query: 717  AEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERM 776
             +AP  +L ID  K RALGV   ++NS +ATA+G + +NDF + GR ++V VQ +   RM
Sbjct: 720  EDAPMYQLDIDHAKLRALGVDISSVNSAIATAWGGSYVNDFIDRGRVKKVYVQGDAEYRM 779

Query: 777  TPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAM 836
             PE +   Y  NANGE VPFSAF T +W+ G  +L R+NG P++ I G  +PG+STG AM
Sbjct: 780  QPEDLNTWYVRNANGEMVPFSAFATGRWDFGSPRLERFNGLPAMNIQGATAPGYSTGDAM 839

Query: 837  AEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTV 896
             ++E++V +LPPG G  W GLSY+E++S  QA +L+AL+ILVVFL+L ALYESW++P  V
Sbjct: 840  KDIEKIVEQLPPGFGVEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFAV 899

Query: 897  MLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCD 956
            +L+VP+G +GA+ A+   G+ NDV+F+VGL+T +GLA KNAILIVEFAKE +EKG  L +
Sbjct: 900  VLVVPLGIIGALLAMNGRGLSNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEKGAGLIE 959

Query: 957  AAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFV 1016
            A + A R+R RPI+MTS+AF LGVVPLAI++G G+ +Q AIGTGV+GGM+S+T LG+ FV
Sbjct: 960  ATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVLGGMMSSTFLGIFFV 1019

Query: 1017 PVCFVWVLTLLKRKPSPVQ 1035
            P+ FV V  +  ++    Q
Sbjct: 1020 PLFFVIVERIFSKREKQAQ 1038