Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1046 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family transporter from Dechlorosoma suillum PS

 Score = 1124 bits (2908), Expect = 0.0
 Identities = 582/1026 (56%), Positives = 739/1026 (72%), Gaps = 2/1026 (0%)

Query: 4    FFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVESVTS 63
            FF+ RP FAWV+ALFI L GL+ IP LP+A+YP VAPP +SI A YPGA+ + M ++V  
Sbjct: 6    FFVRRPIFAWVIALFIILLGLIAIPQLPIARYPTVAPPMVSIYAVYPGATPQTMNDAVVG 65

Query: 64   IIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQAVL 123
            +IE+ L+  K LLY+ES+ +++G A++  TF+PGT+P++AQVDVQNR+K  E R+P  V 
Sbjct: 66   LIERELSSVKNLLYFESSTDTSGFAQITATFKPGTNPELAQVDVQNRIKTVEPRLPAVVR 125

Query: 124  TQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFASEA 183
              GLK E A+S FL+  +L S  G   +  AL DY AR++  EL RV GVG++Q F SEA
Sbjct: 126  QNGLKFESAASSFLMFISLKSDDGRHSEV-ALNDYMARSMVEELRRVDGVGRVQLFGSEA 184

Query: 184  AMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGTLDT 243
            AMR+WVDP KLV Y LS+ D++ A+  QN Q+  G  G  P    Q +T  ++VQG L T
Sbjct: 185  AMRIWVDPAKLVAYKLSMSDLSDAVTQQNTQIAPGRVGGAPTVEGQRVTFPVSVQGQLTT 244

Query: 244  PEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANAIQT 303
            PE FA IVLRANPDGS V LGDVAR+A+G+++Y  S R NG  A A  VQ++PGANA++T
Sbjct: 245  PEQFAAIVLRANPDGSKVVLGDVARVALGAQSYGESNRENGKLAAALGVQMSPGANAVRT 304

Query: 304  ATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNV 363
            +  VK RLAEL++  P G+ YSVP+DT+ FV ++IEKV  TL+EAM+LVFLVM+LFLQNV
Sbjct: 305  SAAVKARLAELAKTMPPGMSYSVPFDTAPFVQISIEKVAQTLLEAMLLVFLVMYLFLQNV 364

Query: 364  RYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERLMAE 423
            RYT +P+IV P+ LLGT  +M   GFSVN++TMFGMVLAIGI+VDDAIVVVENVERLMA 
Sbjct: 365  RYTFIPAIVAPIALLGTFTVMLATGFSVNVLTMFGMVLAIGIIVDDAIVVVENVERLMAS 424

Query: 424  EGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSILFSG 483
            EGLSP EAT+KAM ++SGA++GITLVL AVF+P+A   GSVGVIY+QF++S+AVSILFS 
Sbjct: 425  EGLSPREATLKAMKEISGAVVGITLVLIAVFIPMALAGGSVGVIYRQFTLSMAVSILFSA 484

Query: 484  FLALTFTPALCATLLKPVPHGHHEKAGFFGAFNRGFARVTERYSLLNSELVARAGRWMLA 543
            FLALT TPALCATLLKPV   HHEK GFFG FNR F R+T RY      +V R+GR M  
Sbjct: 485  FLALTLTPALCATLLKPVDGAHHEKGGFFGWFNRMFERMTGRYETRVVAMVRRSGRAMAV 544

Query: 544  YVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMSRDAV 603
            ++ I  VL   + +LP AF+P ED GY +  +QLP  A+  RT    +A E   + R  +
Sbjct: 545  FLAITGVLALGFWQLPSAFLPEEDQGYFITSIQLPSDATTERTLDVVKAFEAHAVGRPGI 604

Query: 604  ANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQFAANGDGAITAVM 663
                 V G+ FSG G NAA+ F T K+W +R  A +A AE  A         +G +  +M
Sbjct: 605  EAVQAVLGWGFSGSGPNAAIIFTTLKEWHERQGA-TAPAEVMAAQEAMGVAREGMVINLM 663

Query: 664  PPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLAEAPQLR 723
            PP I+ LG S GF++RL DR   G  AL+AA+ QLLA A  + ++     EGL     +R
Sbjct: 664  PPAIEELGTSSGFSMRLQDRANQGYAALMAAQQQLLAMAAESKLVTGVYPEGLPPGSSVR 723

Query: 724  LHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMTPESVLR 783
            L IDR+KA ALGVSF  I+ TL+TA GS  +NDF NAGR Q+V++QAE   RM  E +LR
Sbjct: 724  LDIDRQKAEALGVSFANISDTLSTAMGSLYVNDFPNAGRMQQVIIQAEARSRMQVEDILR 783

Query: 784  LYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAMAEMERLV 843
            L+  N  G  V  S  VT QW + P+QLVRY GYP++RIAG A+PG S+G+AMAEMERL 
Sbjct: 784  LHVRNNAGGMVALSEVVTPQWSDAPLQLVRYLGYPAVRIAGSAAPGASSGEAMAEMERLA 843

Query: 844  SELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTVMLIVPIG 903
            ++LPPG    WTG S QE+ S+ QA  L AL++LVVFL+L ALYESW IPL VML+VP+G
Sbjct: 844  AKLPPGFAVEWTGQSLQERQSAAQAPLLMALSMLVVFLVLAALYESWTIPLAVMLVVPLG 903

Query: 904  ALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCDAAIEAAR 963
             +GAV+AV   GMPNDV+FKVG+IT+IGL+AKNAILI+EFAK+L E+G  L +AA  AAR
Sbjct: 904  LIGAVFAVYARGMPNDVFFKVGMITVIGLSAKNAILIIEFAKQLHEQGMGLIEAAAAAAR 963

Query: 964  LRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFVPVCFVWV 1023
            LR RPI+MTS+AF LGVVPL +ASGA A +Q AIGTGV GGM++AT+L V  VPV FV+V
Sbjct: 964  LRLRPILMTSLAFALGVVPLMLASGASAETQHAIGTGVFGGMITATVLAVFLVPVYFVFV 1023

Query: 1024 LTLLKR 1029
            L+L +R
Sbjct: 1024 LSLSER 1029