Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1048 a.a., multidrug efflux RND transporter permease subunit from Klebsiella michiganensis M5al

 Score = 1004 bits (2597), Expect = 0.0
 Identities = 515/1043 (49%), Positives = 712/1043 (68%), Gaps = 7/1043 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M  FFI RP FAWV+A+ I LAG L I  LP+AQYP +APP ISITA YPGA A+ +  +
Sbjct: 1    MPNFFIDRPIFAWVIAIIIMLAGGLSILKLPIAQYPTIAPPAISITAMYPGADAETVQNT 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT +IEQ++NG   L+Y  S  +S G A + +TFE GTDPD+AQV VQN+L  A   +PQ
Sbjct: 61   VTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQNKLALATPLLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG+ VE+ASS FL++  + +T G       ++DY A N+ + + R  GVG +Q F 
Sbjct: 121  EVQQQGISVEKASSSFLMVVGVINTNGTMNQDD-ISDYVAANMKDAISRTSGVGDVQLFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            S+ AMR+W+DP KL  + L+  D+ SA++ QN QV AG  G TP    Q+L A++  Q  
Sbjct: 180  SQYAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQQLNASIVAQTR 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L   E F  I+L+ N DGS VRL DVA++ +G ENY++ A+ NG PA    ++LA GANA
Sbjct: 240  LTNTEEFGNILLKVNQDGSQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TA  ++  L ++  FFP G++   PYDT+ FV ++I +V+ TL+EA++LVFLVM+LFL
Sbjct: 300  LDTANAIRAELKKMEPFFPSGLKIVYPYDTTPFVQISIHEVVKTLVEAIILVFLVMYLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R TL+P+I VPV LLGT  I+ L GFS+N +TMFGMVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAILALFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            MAEEGL P EAT K+MGQ+ GA++GI +VL+AVF+P+AF  GS G IY+QFS+++  ++ 
Sbjct: 420  MAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHH-EKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
             S  +AL  TPALCAT+LKP+  G H    GFFG FNR F + T  Y+     ++   GR
Sbjct: 480  LSVLVALILTPALCATMLKPIQKGSHGATTGFFGWFNRMFDKSTHHYTDSVGNILRSTGR 539

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599
            +++ Y+ I+V + + ++RLP +F+P ED G  +   QLP GA++ RT    + +  + ++
Sbjct: 540  YLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMAQLPAGATQERTQKVLDEMTDYYLT 599

Query: 600  RDA--VANSFIVSGFSFSGQGDNAALAFPTFKDWSQR-DKAQSAEAETAAINAQFAANGD 656
            ++   V + F V+GF F+G+G N  +AF + KDWSQR  +    EA T      F+   D
Sbjct: 600  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQRPGEENKVEAITGRAMGYFSQIKD 659

Query: 657  GAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMM-EG 715
              + A   P I  LG + GF  +L+D+ GLG E L  AR+QL      +P +L  +   G
Sbjct: 660  AMVFAFNLPAIVELGTATGFDFQLIDQAGLGHEKLTQARNQLFGMVAQHPDVLSGVRPNG 719

Query: 716  LAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGER 775
            L + PQ ++ ID+EKA+ALGVS   IN+TL  A+G + +NDF + GR ++V + +E   R
Sbjct: 720  LEDTPQFKVDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYIMSEAKYR 779

Query: 776  MTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQA 835
            M PE +   Y   ++G+ VPFSAF T++WE G  +L RYNG PS+ I G A+PG STG+A
Sbjct: 780  MLPEDIGNWYVRGSDGQMVPFSAFSTSRWEYGSPRLERYNGLPSMEILGQATPGKSTGEA 839

Query: 836  MAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLT 895
            M  ME L  +LP GIGY WTG+SYQE++S  QA +L+A++++VVFL L ALYESW+IP +
Sbjct: 840  MNLMEELAGKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFS 899

Query: 896  VMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEK-GYSL 954
            VML+VP+G +GA+ A T  G+ NDVYF+VGL+T IGL+AKNAILIVEFAK+L +K G  L
Sbjct: 900  VMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 959

Query: 955  CDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVV 1014
             +A +EA R+R RPI+MTS+AFILGV+PL I+SGAG+ +Q A+GTGV+GGM++AT+L + 
Sbjct: 960  IEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIF 1019

Query: 1015 FVPVCFVWVLTLLKRKPSPVQQA 1037
            FVPV FV V     +K   ++ +
Sbjct: 1020 FVPVFFVVVRRRFSKKNEDIEHS 1042