Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1051 a.a., efflux RND transporter permease subunit from Ralstonia sp. UNC404CL21Col

 Score = 1032 bits (2669), Expect = 0.0
 Identities = 542/1031 (52%), Positives = 721/1031 (69%), Gaps = 4/1031 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M+RFFI RP FAWV+AL I LAG+L +P LPVAQYPN+APP +SI+A+YPGASA+ +  +
Sbjct: 1    MARFFIDRPVFAWVIALAIILAGVLALPKLPVAQYPNIAPPNVSISANYPGASARTVESA 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT+IIE+ +NGA GLLY  S++++ G   + ++F  GT PD+A V+VQNRLK  E R+P+
Sbjct: 61   VTAIIEREMNGAPGLLYMSSSSDAAGNVSINLSFTQGTSPDLAAVEVQNRLKIVEERLPE 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V   G+++E+A+  +++  +LT+  G R D   L D A+ ++  +L RVPGVG  Q F 
Sbjct: 121  VVRRNGIRIEKAAENYMMYLSLTAERG-RFDGIDLGDLASSDLIPQLRRVPGVGTAQLFD 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            +E AMR+W D  KL   GL+  D++ A+R  N ++  G  GS        + A++     
Sbjct: 180  AEYAMRIWPDADKLTALGLTAGDLSDAVRRYNARITVGEIGSGAVPGSAPINASVTGDDG 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L TP+AF  I LRA+  G  V L DVAR+ +G  +Y   +R+NG PA    ++LAPGANA
Sbjct: 240  LTTPDAFGQIPLRADAQGRMVLLRDVARVELGGSDYLYLSRMNGKPATTIGIKLAPGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            +  A  V+  L E    FP GV Y V YD+SRFV +AIE+V+ TL+EA+VLVFLVM LF+
Sbjct: 300  VGVAKRVRAVLDEAQAHFPPGVRYEVAYDSSRFVGIAIEQVVKTLLEAVVLVFLVMMLFM 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN+R TL+P++VVP+ LLGT  +M  +GFS+N++T+FG+VLAIGILVDDAIVVVENVER+
Sbjct: 360  QNLRATLIPTLVVPIALLGTFAVMLPMGFSINVLTLFGLVLAIGILVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M EEGLSP EAT KAM Q+SGAI+GI+LVL AVF+P+AF  G+VG IY+QFS+SLAVS++
Sbjct: 420  MHEEGLSPREATAKAMRQISGAIVGISLVLTAVFVPMAFFGGAVGNIYRQFSLSLAVSMV 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHH-EKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
            FS FLALT TPALCATLLKPV  GH  E+ GFFGAFNRGFAR+T RY    ++L+ R GR
Sbjct: 480  FSAFLALTLTPALCATLLKPVQAGHGAERKGFFGAFNRGFARLTARYQGGVAKLLNRTGR 539

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRT-DHTAEALEKFLM 598
             ++AY  ++ V+   + +LP AF+P ED G  +  V LP GA++ +T D   +A + F+ 
Sbjct: 540  ALVAYGAVIGVVVLLFTQLPTAFLPEEDTGEFMTVVMLPTGATQAQTLDVVRQAEQHFMT 599

Query: 599  SRDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKA-QSAEAETAAINAQFAANGDG 657
               AVA++  ++GFS  G G NAA+ F T KDW QR    Q  +A     NA F      
Sbjct: 600  QEPAVASTLAITGFSLYGNGQNAAMLFLTLKDWKQRKGVDQHVDAVVERANAAFGKIKGA 659

Query: 658  AITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLA 717
             + A+  P +  LG+  GF LRL DRGG G E L  ARD++LA A  +P +      G  
Sbjct: 660  MVMAMNSPALPELGSKPGFDLRLQDRGGAGYERLAQARDRMLAEAAKHPALSEVTFAGQG 719

Query: 718  EAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMT 777
            +APQ+ + +DR+KA ++GVS + IN TLA  FGS    DF    + +RV+VQA+  +R++
Sbjct: 720  DAPQVLIDVDRKKALSMGVSIDDINRTLAVMFGSDYAGDFVYRNQVRRVIVQADGKQRVS 779

Query: 778  PESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAMA 837
             E + R++  NA G  VP SAF TT+W  GP++L RYNG+P++ I G  +PGHS+G+AMA
Sbjct: 780  VEQLGRMHVRNAAGAMVPLSAFTTTKWIVGPLKLDRYNGFPAMTITGSPAPGHSSGEAMA 839

Query: 838  EMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTVM 897
             ME +   LP G GY WTG S++E++S  QA +LFAL+ILVVFL L ALYESW+IPL VM
Sbjct: 840  AMESIARGLPEGFGYEWTGQSFEERLSGAQAPALFALSILVVFLCLAALYESWSIPLAVM 899

Query: 898  LIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCDA 957
            L+VP+G LGA+   TL  +PND+YFKVGLI  IGL+AKNAILI+E AK+L  +G  L DA
Sbjct: 900  LVVPLGVLGALLGATLRFLPNDIYFKVGLIATIGLSAKNAILIIEVAKDLVAQGMGLIDA 959

Query: 958  AIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFVP 1017
             +EAARLRFRPIVMTS+AF  GVVPLAIA+GA +ASQRAIGTGV+GG+++AT+L V  VP
Sbjct: 960  TLEAARLRFRPIVMTSLAFAFGVVPLAIATGAASASQRAIGTGVLGGIIAATVLAVFLVP 1019

Query: 1018 VCFVWVLTLLK 1028
            V FV V  + K
Sbjct: 1020 VFFVVVRRVFK 1030