Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  258 bits (660), Expect = 1e-73
 Identities = 155/360 (43%), Positives = 216/360 (60%), Gaps = 21/360 (5%)

Query: 13  LAMAIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPG 72
           LAMA+ LAGC+  A     A     V IVTL  E  A+  ELPGR    R+AEVR +V G
Sbjct: 14  LAMAVFLAGCQEEAAPP--AQQKPKVGIVTLQAEPFAVTTELPGRTRAYRIAEVRPQVNG 71

Query: 73  IVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLVK 132
           I+  + F EG+DVKAG  L+QID + ++A L  A+A +A ++++         RY  LVK
Sbjct: 72  IIQKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASSKSLAD-------RYAELVK 124

Query: 133 IEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGAL 192
            +AVS+Q +D A A       A   A+A+++ AR+++ Y  V APISGR+GR+  TEGAL
Sbjct: 125 DQAVSKQAYDEARA-------ASLQAEAELERARIDVRYTKVLAPISGRVGRSAVTEGAL 177

Query: 193 VGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSA---DSQRLTAQVE-GTD 248
           V  G+A  +A IQQLDPIY+D TQ A D L LR+ L +G L     ++ ++T ++E G+D
Sbjct: 178 VSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKLEDGSD 237

Query: 249 FQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAV 308
           +   G+L F++V+VD GTG V LR  F N D  LLPGM+V  +   G  + AILVPQ+ V
Sbjct: 238 YAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMKSEAILVPQQGV 297

Query: 309 QRGSDGQARVLVA-TNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPV 367
            R + G    +V       E R ++T    G+RW + EGL+PGD+VI      + PG+ V
Sbjct: 298 TRNTKGDPTAMVVNAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITEGLQFIQPGVEV 357