Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 407 a.a., multidrug efflux system protein from Sinorhizobium meliloti 1021

 Score =  312 bits (800), Expect = 9e-90
 Identities = 179/369 (48%), Positives = 229/369 (62%), Gaps = 6/369 (1%)

Query: 8   IRVGALAMAIALAGCEPAAEQDGAANAS--YPVEIVTLAPEQVALAAELPGRVEPMRVAE 65
           I   ALA  I LAGC+   EQ  AA A    PV + T   E + +  ELPGR+   R+AE
Sbjct: 11  ILAAALASVIFLAGCQKNEEQQAAAAAPPPSPVAVFTTKAEPLPITNELPGRITATRIAE 70

Query: 66  VRARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVK 125
           VR R+ GIV+ + FE+G  VK GDVL++IDPAPF+  +  AEA L RAQAV  +A+    
Sbjct: 71  VRPRISGIVVERVFEQGTMVKEGDVLYRIDPAPFQVKVDSAEATLKRAQAVVDQAKRTAD 130

Query: 126 RYEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRA 185
           R   L + +  + Q +D A A L  A A V  A+A +  A+LNL Y  VTAPISGRIGRA
Sbjct: 131 RQSRLKEAQVTAVQQYDDAIAALAQAEADVGIAEAGLAEAKLNLQYTNVTAPISGRIGRA 190

Query: 186 LATEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQV- 244
           L TEGALV   +   +A IQQLDPIY DFTQSA D +RLR+ALKDG   +       Q+ 
Sbjct: 191 LITEGALVNTNDPQNLATIQQLDPIYADFTQSATDLIRLRKALKDGQWMSAKNEAEVQLI 250

Query: 245 --EGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAIL 302
             +GT +   G L+F++ +VD  TGQV LRG F N +  LLPGMYVRV+  QG +  AI 
Sbjct: 251 LDDGTPYALKGRLLFSEAAVDATTGQVTLRGEFPNPNNDLLPGMYVRVQIQQGLEKDAIT 310

Query: 303 VPQRAVQRGSDGQARV-LVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGL 361
           VPQ+AVQR + GQ++V +V  +   E R V  G   G RWQ+T GL+PG++VIV     +
Sbjct: 311 VPQQAVQRNNAGQSQVYVVNADNKVEFRNVTLGRTVGERWQVTSGLKPGEKVIVEGFQKV 370

Query: 362 APGMPVAPA 370
            PG PV P+
Sbjct: 371 GPGAPVQPS 379