Pairwise Alignments

Query, 320 a.a., BNR domain protein from Pseudomonas putida KT2440

Subject, 349 a.a., photosystem II stability/assembly factor from Synechococcus elongatus PCC 7942

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 86  VSFVDAKR-GWAVGHWGAILITTDGGESWQVQRLATEEDRPLFAVHFFNARQGVAVGLWS 144
           ++F   K+ GW VG   A+  T DGG+SW  + L  +E   L ++  F   +G  VG  S
Sbjct: 56  IAFTSNKQHGWLVGTDLALYETLDGGQSWSERALDLDETYRLNSIS-FKGDEGWVVGQPS 114

Query: 145 LVLTTEDGGQTWSEQPL-QAPPGAKRADLNLMGLFADSRGTLYATAEHGQVLHSEDQGKN 203
           L+L T DGG+ W   PL +  PG+       + + A  +G      +   +  S D GK+
Sbjct: 115 LMLHTTDGGKNWLRIPLSEKLPGSP------LLVTALGKGEAEMATDVAAIYRSRDGGKS 168

Query: 204 WRYLDTGYEGTLWAGAVLADGRLLLGGQRG 233
           W+       G   + +   DGR L    RG
Sbjct: 169 WQAQVPDAAGVARSVSRSRDGRYLAVSARG 198



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 95  WAVGHWGAILITTDGGESWQVQRLATEEDRPLFAVHFFNARQGVAVGLWSLVL 147
           W  G  G +L++ DGGE WQ  R+  +    L+ + FF  +QG  +G   L+L
Sbjct: 289 WLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLL 341



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 56  GDHGVVLLSDDQGLQW-RQASSVPLSTPLTGVSFVDAKRGWAVGHWGAIL 104
           G  G +L+S+D G  W R      L + L  + F   K+G+ +G  G +L
Sbjct: 292 GGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLL 341



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 50/236 (21%), Positives = 78/236 (33%), Gaps = 56/236 (23%)

Query: 55  VGDHGVVLLSDDQGLQWRQASSVPLSTPLTGVSFVDAKRGWAVGHWG----AILITTDGG 110
           VG   ++L + D G  W +   +PLS  L G   +    G           AI  + DGG
Sbjct: 110 VGQPSLMLHTTDGGKNWLR---IPLSEKLPGSPLLVTALGKGEAEMATDVAAIYRSRDGG 166

Query: 111 ESWQVQ-----RLATEEDRPLFAVHFFNARQGVAVGLWSLVLTTEDGGQTWSEQPLQ--- 162
           +SWQ Q      +A    R     +   + +G     W    TT    Q  S + LQ   
Sbjct: 167 KSWQAQVPDAAGVARSVSRSRDGRYLAVSARGNFYSTWKPGDTTWTPHQRTSSRRLQLMG 226

Query: 163 ---------------------------------------APPGAKRADLNLMGLFADSRG 183
                                                  A    + A    + L   S+ 
Sbjct: 227 FGPDDRTWLIARGGRLQFSKTSQIDNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQ 286

Query: 184 TLYATAEHGQVLHSEDQGKNWR--YLDTGYEGTLWAGAVLADGRLLLGGQRGTLLQ 237
            ++ +   G +L SED G++W+   +       L+     A  +  + GQRG LL+
Sbjct: 287 EIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLR 342