Pairwise Alignments

Query, 320 a.a., BNR domain protein from Pseudomonas putida KT2440

Subject, 336 a.a., BNR repeat protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (274), Expect = 6e-29
 Identities = 89/300 (29%), Positives = 140/300 (46%), Gaps = 29/300 (9%)

Query: 1   MKFRV-SFTAALLAAALPLMSLQAAPLQAVPAVQASNATQATMLAAGWAGARVVAVGDHG 59
           M FR+    AA+    L      +A  +  P +Q   A  + +L    AG  +VAVG+ G
Sbjct: 1   MSFRILQCVAAISVGCLFFSPSFSAQSEHFPQIQPL-AASSLVLDIAHAGQHLVAVGERG 59

Query: 60  VVLLSDDQGLQWRQASSVPLSTPLTGVSFVDAKRGWAVGHWGAILITTDGGESWQVQRLA 119
            VL+  D+   W+Q  + P S  LT V F++ K GWAVGH   IL T DGG++W +Q  +
Sbjct: 60  HVLVLTDK---WQQVPT-PTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQS 115

Query: 120 TEEDRPLFAVHFFNARQGVAVGLWSLVLTTEDGGQTWSEQ-------------------P 160
           TE ++P   V F N ++G+A+G + L   T DGG  W+E+                    
Sbjct: 116 TEIEKPFLDVLFLNEQEGMAIGAYGLFYRTRDGGANWTEEFHEELLAEEDVSYLAELKNS 175

Query: 161 LQAPPGAKRADL--NLMGLFADSRGTLYATAEHGQVLHSEDQGKNWRYLDTGYEGTLWAG 218
            QA    +RA L  +   + A   G L    E G V  S D+G+++      Y+G+++  
Sbjct: 176 DQAAYLTERASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQSFTRTGFDYDGSMFNA 235

Query: 219 AVLADGRLLLGGQRGTLLQGSADGKGFHRVPTQSKGSVTCV-AVAGSRVLAVGLDGLSVQ 277
             L D   ++ G RG + +       +  +    K S+  V A + + +  VG  G+ +Q
Sbjct: 236 IQLQDAVYVM-GLRGHVFKADLSLAQWDEIDMPVKSSINGVMATSETSLYLVGNAGIVIQ 294



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 267 LAVGLDGLSVQSSDGGHSF-----QETQTADGLSLTAALFNAEGVPVLFSRRGVMPY 318
           +A+G  GL  ++ DGG ++     +E    + +S  A L N++    L  R  ++P+
Sbjct: 134 MAIGAYGLFYRTRDGGANWTEEFHEELLAEEDVSYLAELKNSDQAAYLTERASLLPH 190