Pairwise Alignments

Query, 552 a.a., acetate permease from Pseudomonas putida KT2440

Subject, 578 a.a., sodium/solute symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  163 bits (413), Expect = 1e-44
 Identities = 152/589 (25%), Positives = 253/589 (42%), Gaps = 77/589 (13%)

Query: 30  LNLHAIGMFMVFVLFTLCITWWAARRTRSTTDFYSAGGGIQGWQNGLALAGDYMSASTLL 89
           + +  +   +V + F L I      R  ST +FY AGGG+    NG+A A D+MSA++ +
Sbjct: 1   MGVQGLTYLIVGLSFALYIGIALWTRAGSTKEFYVAGGGVHPVVNGMATAADWMSAASFI 60

Query: 90  GITALIYTSGMDGYIYLIAFFAGWPVLLLLMTERLRNLGRFTFADITSYRLDQGKVRTMA 149
            +  ++   G DG +YL+ +  G+ +L L M   LR  G+FT  D    R      RT+A
Sbjct: 61  SLAGIVSFVGYDGSVYLMGWTGGYVLLALCMAPYLRKFGKFTVPDFLGERYYSQAARTVA 120

Query: 150 AIGSLTVVCFYLVAQMVGAGQLIRLLFGLDYHIAVVIVGALMMLYVTFGGMVATTWVQII 209
            I ++ +   Y+  QM G G +      ++    V I  A++  Y   GGM   T+ Q+ 
Sbjct: 121 VICAIFICFTYIAGQMRGVGVVFSRFLEVEVDTGVYIGMAVVFFYSVLGGMKGITYTQVA 180

Query: 210 KAFLLLVGGSL-VLFLAMREFDFSYDALVSKAMDTHALGERLLAPGSLLADPLTALSLSL 268
           +  +L+    +  +FL++         +   A    A G      G  L D L  LS+ L
Sbjct: 181 QYCVLIFAFMVPAIFLSVMMTGHIIPQIGFGAQLLDAAGNN---SGVYLLDKLNNLSVDL 237

Query: 269 G--------------------LVFGTAGLPHILMRFFTVSDAREARKSVLYATGFIGYFF 308
           G                    L+ GTAGLPH+++RFFTV   ++AR S  +A  FI   +
Sbjct: 238 GFAPYTDGSKSMIDVLCITGALMVGTAGLPHVIVRFFTVPKVKDARVSAGWALVFIAIMY 297

Query: 309 NVIFLLGLASIVIVSQ--------------QPKFFEGGEVGGKLL-----GGGNMV---- 345
             +  L   S V + +               P + +  E  G +      G G +     
Sbjct: 298 TTVPALAAFSRVNMIETINGPDQKGVAYETAPNWIKNWEKTGLIKWDDKNGDGKIYYATG 357

Query: 346 ----------------VMHLAQAVGGNL---LLGFLSAVTFATILAVVSGLALAGASAIA 386
                           ++ LA     NL   ++  ++A   A  L+  +GL L  +++++
Sbjct: 358 KIEDAASTNEMKIDNDIIVLATPEIANLPAWVIALVAAGGLAAALSTSAGLLLVISTSVS 417

Query: 387 HDLYARVIMKGAASEAQELRVTKLATLSLGLVAIALGILFENINVAFMVALAFGIAASAN 446
           HDL  + +M    S+ +EL   +LA   +G+V      +     VA +VA AFG+AAS+ 
Sbjct: 418 HDLLKKNLMPN-ISDKKELMYARLAA-GIGIVIAGYFGVNPPGFVAAVVAFAFGLAASSL 475

Query: 447 FPVLFLSMFWSGLTTRGALAAGYVGLLSAMGFVVFSKLVWVDVLHFAEPLFPYTQP---A 503
           FP + + +F   +   GA+A   +GL    G++V+ K +     +     F    P    
Sbjct: 476 FPAIIMGIFSKTMNKEGAIAGMILGLFFTSGYIVYFKFI-DPTANVPANWFLGISPEGIG 534

Query: 504 LFSMPLAFLVAYAVSRMDRTARAKAERAAFADQFVRGQTGLGASGAVDH 552
           +  M + F+VA  VS++        +    + +F +     GA  A DH
Sbjct: 535 MVGMVINFVVAAIVSKVTAATPVHVQEMVESIRFPK-----GAGEASDH 578