Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 474 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  235 bits (600), Expect = 3e-66
 Identities = 150/354 (42%), Positives = 210/354 (59%), Gaps = 37/354 (10%)

Query: 325 ARYRLDQLNGNSK------ANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESP 378
           ARYRL  +  +S       A+R +  LA R A + +T+L+TGESG GKE++A+ IHN S 
Sbjct: 117 ARYRLPAMGEDSDVVAVDAASRNLFSLAARVAQTDATVLLTGESGVGKEVVARYIHNHSA 176

Query: 379 RRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP 438
           RR+GPFVAINCAA PESLLE+ LFGYE+GAF+G+ +  + G FE A  GTL LDE+ +MP
Sbjct: 177 RRKGPFVAINCAAIPESLLEATLFGYEKGAFTGANQA-QAGKFEQAQNGTLLLDEVTEMP 235

Query: 439 VSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILR 498
           ++LQ +LLRVLQEREV R+G  +P+ +D+R++A +++D+  A+  G FR DLY+RLN+  
Sbjct: 236 LALQAKLLRVLQEREVERVGGKQPVRLDIRVVATSNRDMAEAVAKGIFREDLYYRLNVFP 295

Query: 499 LQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALLPYLERYAWPGNVRELENVI 558
           L    LR+RP+D+  + R        +   PG    PAA    L  ++WPGNVREL NV+
Sbjct: 296 LLIPALRQRPDDVVPLARHFLADQGGKSGRPGLLLTPAA-EQALRVHSWPGNVRELVNVM 354

Query: 559 ERAMLSARELLEEHRVNEQYLARVL----------------PELCEGPPPSP-ARKKSSG 601
           +RA++    L    +V+  +L  V                 P + E P  +P A +  S 
Sbjct: 355 QRALI----LAPGDQVDAAHLHLVARPGAPAAAAPAYVPPPPVMMEVPQLAPQAPQAISV 410

Query: 602 ETD--LHTIGKVA------QLRHVKETLESCRGNLDEAARRLGISRTTLWRRLR 647
           E D  L + GK A      +   + ETL S  G+   A  +LGIS  TL  +LR
Sbjct: 411 EEDGALQSGGKKADSIKDWERELILETLASVGGSRKLAVEKLGISERTLRHKLR 464