Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 526 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  246 bits (629), Expect = 1e-69
 Identities = 168/475 (35%), Positives = 246/475 (51%), Gaps = 27/475 (5%)

Query: 184 RKALEEALGILDTQRVEIA----KRRHLNAVLRHIPAGVAAVDNQGVVQSLNPALAQLLD 239
           R+  E   G+L+ + V+      +   +  VL  I  GV ++D  G + S+N    +   
Sbjct: 60  RQRFESMRGLLECREVQTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYG 119

Query: 240 LPVSAALGRPLQQL-CPE---LDLQQALQEGTGEENRVMRLGSHAVVSNLLPILEN-GER 294
                   R L  L  P+   LD     +           LG         PI +  G  
Sbjct: 120 CAGEDVTERSLTSLRLPDHGLLDCLHGRELHDARRELATPLGRLQFFVTRTPIRDGVGRI 179

Query: 295 TGLVLTCQDITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHS 354
            G V   +D+  +++  + +      G        D + G+  A    +  A+R A + +
Sbjct: 180 IGAVEIARDMREIRKLARTLVDADHVG-------FDDIVGHHPAIEAAIAFARRVAATDA 232

Query: 355 TILITGESGTGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRK 414
            I I GESGTGKEL A+ +H ES R+ GPFV INCAA PE LLESELFGYE GAF+G R+
Sbjct: 233 VIAIRGESGTGKELFARAMHAESGRK-GPFVPINCAALPEQLLESELFGYERGAFTGGRR 291

Query: 415 GGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATH 474
            GKPGLFE+A  GT+FLDEIGDMP++ Q ++LRV+QE+ V R+G    + +D RII AT+
Sbjct: 292 EGKPGLFESARGGTVFLDEIGDMPLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATN 351

Query: 475 KDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLL--VQGQPPGAA 532
           + L   ++DG FR DLY+R+N+L +   PLRER  DI L+     Q+L   + G  P   
Sbjct: 352 RPLERMVEDGRFRQDLYYRINVLPMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFT 411

Query: 533 DIPAALLPYLERYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLPELCEGPPP 592
           D     L  L  + WPGNVREL+NV+ERA + A   +    V++Q++     EL +G   
Sbjct: 412 D---GALARLRSHEWPGNVRELKNVVERAAILAGGAV----VDDQFIL-FSHELGKGVFN 463

Query: 593 SPARKKSSGETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTTLWRRLR 647
           +     ++G+ D          + + E +     ++ +AA+ LGIS T L  ++R
Sbjct: 464 AARTASAAGQGDTLKEQVANFEKKIVEDVVRRAPSIRKAAKILGISHTALLDKMR 518