Pairwise Alignments

Query, 348 a.a., putative glycine betaine/L-proline ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 323 a.a., glycine betaine-binding protein from Phaeobacter inhibens DSM 17395

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 72/346 (20%), Positives = 133/346 (38%), Gaps = 49/346 (14%)

Query: 5   LSRGLAGFALLAALVPATASFAKD--KIVIGEQNWTGAIAIQYILGDIISNRLDGEVSYL 62
           +S GL    + AA + A+A+ A D  ++ I + +W  A  +  +   ++      +V+ +
Sbjct: 4   ISTGLG--CVFAAAITASAAQADDCGEVSIMQGDWGSAQIVTAVAKFLMEEGYGCDVTAM 61

Query: 63  A-GDLPILFAAAAKGDGSVDVLTDIWLPNQSAAFAKYVTGGTHSLIPNKQPYVGVQGFYI 121
                P L  A+    G  D+LT+IW  N + A+   V  G    +       GV+GF++
Sbjct: 62  PLSSNPAL--ASVSETGEPDILTEIWT-NGAPAYQGLVDSGAIIPVTEVLSDGGVEGFFV 118

Query: 122 PGYIQDKYNVKSVYDLKKPEVAKLFAPLGGGKSQLLVG------PAGWESTYIGQIKAKD 175
           P Y+ +++          PE+A +    G   +  LVG      P GW    +     K 
Sbjct: 119 PNYLVEEH----------PELATIE---GIAANPELVGNRFHNCPEGWTCLNVSTNLMKA 165

Query: 176 FGF-DGNFES-VSTEASVTYAKLDAAYKAERGVIFYAYTPDWIFSAYDLRRLDEPPFDGY 233
            G  D   E+ V        A + AAY+ +     + + P  +   Y +  +D  P D  
Sbjct: 166 GGLIDAGIENFVHGSGETLAASIAAAYENKEPWFGFYWAPTSVLGKYPMTLVDMGPHDP- 224

Query: 234 AQDNKKGDPLYKADGCWKFISPTVDADWLNKSSITCAYPDAKVHILASSALRQRAPRIAA 293
                      +   C    + T + D    +    A+P ++V  + S         I+ 
Sbjct: 225 -----------EKHAC----NITAECD----TPAMSAFPRSEVVTVLSKEFMAENAEISE 265

Query: 294 FLENVSIDPASLNDLILKIEREKQPADAAAKAWVAANQATVDRWLS 339
            + N+S   A + + +  +E      D  A  ++   +     WL+
Sbjct: 266 LMTNLSFTNAQMGETLAWVEDNNASYDEGAVHFLTTYKDVWGAWLN 311