Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  239 bits (610), Expect = 1e-67
 Identities = 129/264 (48%), Positives = 175/264 (66%), Gaps = 2/264 (0%)

Query: 35  LQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAFSESLVEAELFGHE 94
           ++QV+ +EA+VLI+GE+GTGKE+VAR+IH  SGRRNGPFV +NCGA    L+E+ELFGHE
Sbjct: 151 IEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHE 210

Query: 95  KGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPID 154
           KGAFTGA+ A+ G FE   GGTLFLDEIGD+PM++QVKLLRVLQER   R+G   +I  +
Sbjct: 211 KGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKAN 270

Query: 155 VRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERPGDILPLTRHFIKTYCNRL 214
           VRV+AAT+  L++ I    FREDLYYRLNV  +++  LR+R  DI PL    + T     
Sbjct: 271 VRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDI-PLLLQELMTRMEAE 329

Query: 215 GYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGLVQDDDLRLSHLRIERQDK 274
           G   +  +P A   ++ +DWPGN+REL N++   +++  N LV  + L   +   +  + 
Sbjct: 330 GAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEF 389

Query: 275 SP-VSTAESAEEQLLRAFQRLFEE 297
            P  S   S EEQ     + +F E
Sbjct: 390 QPEPSRFSSVEEQERDVLEGIFAE 413