Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  256 bits (655), Expect = 7e-73
 Identities = 141/338 (41%), Positives = 205/338 (60%), Gaps = 21/338 (6%)

Query: 22  VFEDARSQALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAF 81
           V  D +S  LLA   +VA ++A+V+I+G +G+GKE+++R+IHN S R+ GPF+A+NC A 
Sbjct: 132 VVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAI 191

Query: 82  SESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRVLQERE 141
            ++++EA LFG+EKGAFTGA+ A  G FE+  GGT+ LDEI ++ + +Q KLLRVLQERE
Sbjct: 192 PDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQERE 251

Query: 142 VVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERPGDILP 201
           V RLGSRKSI +DVRV+A +N  L + + AG+FREDLYYRLNV  L    L ER  DI P
Sbjct: 252 VERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEP 311

Query: 202 LTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGLVQDDD 261
           L  H I+ +C +LG     ++P A  KL++Y WPGN+REL+NV+   L++  NG +Q + 
Sbjct: 312 LANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEH 371

Query: 262 LRLSHLRIERQDKSPVSTAESAEEQLLRAFQRLFE----------------EQAGGLHEK 305
           + L    ++  D S +  A + E       + + E                 Q+ GL  +
Sbjct: 372 ILLE--GVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSGLGGE 429

Query: 306 VED---SLLRSAYRFCHCNQVHTASLLGLSRNITRARL 340
           + D   +++      C   +   A  LG+S    R +L
Sbjct: 430 LRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467