Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 484 a.a., nitrogen assimilation regulatory protein from Sinorhizobium meliloti 1021

 Score =  243 bits (619), Expect = 1e-68
 Identities = 147/346 (42%), Positives = 201/346 (58%), Gaps = 18/346 (5%)

Query: 22  VFEDARSQALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAF 81
           V   A  Q +   L ++  ++ +++I GE+GTGKELVAR +H+   RRNGPFVA+N  A 
Sbjct: 140 VGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAI 199

Query: 82  SESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRVLQERE 141
              L+E+ELFGHEKGAFTGA     G FE+  GGTLFLDEIGD+PM  Q +LLRVLQ+ E
Sbjct: 200 PRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE 259

Query: 142 VVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERPGDILP 201
              +G R  I  DVR+VAATN  L ++I  G FREDLYYRLNVV L+L PLR+R  DI  
Sbjct: 260 YTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPD 319

Query: 202 LTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGLVQDDD 261
           L RHF++    + G    R   EA   + ++ WPGN+RELEN++     +    ++  + 
Sbjct: 320 LVRHFVQ-QAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREI 378

Query: 262 LRLSHLRIERQDKSPVSTA---------ESAEEQLLRAFQRLFEE--QAGGLHEKV---- 306
           +  + LR E  D SP+  A           A E+ +R +   F +     GL+++V    
Sbjct: 379 IE-NELRSEIPD-SPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEM 436

Query: 307 EDSLLRSAYRFCHCNQVHTASLLGLSRNITRARLIAIGELVVNRRR 352
           E  L+ +A      NQ+  A LLGL+RN  R ++  +G  V    R
Sbjct: 437 EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSR 482