Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 445 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  263 bits (672), Expect = 7e-75
 Identities = 144/345 (41%), Positives = 208/345 (60%), Gaps = 21/345 (6%)

Query: 2   QLLTLPPSPSLATSI------RATAQVFEDARSQALLAHLQQVAPSEASVLIIGETGTGK 55
           + + LPP P L  ++       + A V++D    AL+   +Q+APS+ASVLI+GE+GTGK
Sbjct: 95  EYIPLPPDPELIAAVLEAVTEESHALVYKDPAMGALVRMAEQIAPSDASVLIVGESGTGK 154

Query: 56  ELVARHIHNLSGRRNGPFVAVNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGG 115
           E++ARHIH  S R  G F+AVNC A  E+L+E+ELFGHEKGAFTGA+A + G FEE NGG
Sbjct: 155 EIIARHIHRKSRRAQGRFIAVNCAAIPEALLESELFGHEKGAFTGAVARRLGKFEEANGG 214

Query: 116 TLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFR 175
           TL LDEI ++ + +Q KLLRVLQERE+ R+G R+ I +DVR++A +N  ++  + AG+FR
Sbjct: 215 TLLLDEISEMDVRLQAKLLRVLQEREIDRVGGRQPIKVDVRILATSNRDMEAEVRAGHFR 274

Query: 176 EDLYYRLNVVSLQLYPLRERPGDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWP 235
           EDL++RLNV++L L PLR+RP DI  L  HF + + +  G     L+ E  + L  + W 
Sbjct: 275 EDLFFRLNVITLALPPLRKRPADIDLLADHFARKFADLNGVPYRPLADETRQSLRGHSWR 334

Query: 236 GNIRELENVIHHTLLVCRNGLVQDDDLRLSHLRIERQDKSPVSTAESAEEQLLRAFQRLF 295
           GN+RELEN +H  +L+     +  + + L+            + A + E  L  +     
Sbjct: 335 GNVRELENTLHRAVLLSSGPRILPEAILLT--------GGDTANAPAGESTLTGSL---- 382

Query: 296 EEQAGGLHEKVEDSLLRSAYRFCHCNQVHTASLLGLSRNITRARL 340
               G     VE  L+    R    N+ H A++LG+S    R +L
Sbjct: 383 ---VGRTVADVERDLIIDTLRHTLGNRTHAATILGISIRTLRNKL 424