Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 296 a.a., D-ribose ABC transporter substrate-binding protein from Klebsiella michiganensis M5al

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 28/288 (9%)

Query: 33  AMAAGADSGAEASATVPSLKGKRIAISTVGTSIYFDSRAFKAQVEEVQRLGGTPITLDAG 92
           A++A   + A A  T+       + IST+    +   +  +   +E  +LG   + LD+ 
Sbjct: 14  ALSATVSANAMAKDTIA------LVISTLNNPFFVSLK--EGAQKEADKLGYNLVVLDSQ 65

Query: 93  RNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAAGIPLFTIEVPSQYA--VNT 150
            N    +  +Q+L       ++        +    K  + A IP+ T++  +     V+ 
Sbjct: 66  NNPAKELANVQDLTVRGTKLLLINPTDSDAVGNAVKLANQAKIPVITLDRQASKGDVVSH 125

Query: 151 ISADNWSTGLLLAKQLVADLRGKGRVLLFNGFYGVPSC---GIRYDQLKLVSKFYPQIEF 207
           I++DN   G +    +   +    +++   G  G  +    G  + Q     KF   +  
Sbjct: 126 IASDNVLGGKMAGDYIAKKVGENAKIIELQGIAGTSAARERGEGFQQAVAAHKF--NVLA 183

Query: 208 IQPELRDVIP--NTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGASQALIEAGRNEV 265
            QP   D     N +Q+       LL  +P  ++ A++A  D   LGA +AL  AG+++V
Sbjct: 184 SQPADFDRTKGLNVMQN-------LLTAHP--DVQAVFAQNDEMALGALRALQTAGKSDV 234

Query: 266 RTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAGE 313
              G DGTP+  + +      +AA +AQ P  IG   V    + L GE
Sbjct: 235 MVVGFDGTPDGEKAVN--SGKLAATIAQLPEQIGVKGVETADKVLKGE 280